Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0449 ATGAGAAAAATCTCTACTTCTAATTCTTCATCATCTATCAACAGCAACAACAACCCTTTTATCTCAACAGCATCTTCTCTTACACATGCAAATTCTGATGAACTTCATACAGATCTTAGGCTTGGACTTAGCATTCCCATCACTCAGCATGTTGCCTCTTCTATGTCAAGGAGGAACCGGCAACAATTGCAGCCACTGCAAAGTGGTTCAACAGAATCTGGTGAAGTAAATGATGAGAGCTTCTTTGTGAAAGTGTACATGGAAGGCATTCCTATTGGCAGAAAACTCAATCTATTAGCTCATGATGGCTACTTAGAGTTAGTGAAAACTCTTGAACAAATGTTTGACACTACCATTCTATGGGGGAATGAGATGGATAGAGTGCAACCAGAGAGATGTCATGTGTTAACATATGAAGATGGAGAAGGGGATTTGGTTATGGATGTTCTTATCAACTGTAAAGAGGTTGAAGATCACAAGGGTCGACGCATTCCGGTGCTAAATCATAGCATATATATGGCACAAGCATGA 531 0.3992 MRKISTSNSSSSINSNNNPFISTASSLTHANSDELHTDLRLGLSIPITQHVASSMSRRNRQQLQPLQSGSTESGEVNDESFFVKVYMEGIPIGRKLNLLAHDGYLELVKTLEQMFDTTILWGNEMDRVQPERCHVLTYEDGEGDLVMDVLINCKEVEDHKGRRIPVLNHSIYMAQA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0449 176 Pfam AUX/IAA family 65 146 IPR033389 -
Lal24g0449 176 MobiDBLite consensus disorder prediction 53 74 - -
Lal24g0449 176 PANTHER AUXIN-INDUCED PROTEIN 7 147 - -
Lal24g0449 176 SUPERFAMILY CAD & PB1 domains 73 147 - -
Lal24g0449 176 ProSiteProfiles PB1 domain profile. 80 169 IPR000270 GO:0005515
Lal24g0449 176 Gene3D - 74 170 - -
Lal24g0449 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 147 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0449 Lal-Chr24 3155433 3158766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0449 61 147 B3 DNA Binding Superfamily AT4G23980 34.483 9.40e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal24g0449 AUX_IAA 5.9e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0449 K14484 - gmx:100781660 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0560 13 3654706 3655836 Lal24g0449 24 3155433 3158766 LSH
Lal5g0204 5 1769341 1770857 Lal24g0449 24 3155433 3158766 PCT
Lal24g0449 24 3155433 3158766 Lal5g0204 5 1769341 1770857 PCT