Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0446 ATGCAAAATCTCAGTCATCCTAACAAAGGGCATTTTCTGGCTGATATCGGAAAGAAGTTGAACTCCATCTCTCATATCATGTTAATGTTTCTTCTCAAAACCAACATATGTCTAAGACAAAGAAAATATAAAAACTTAATTGGTAGCTTGGACAAGGTGGAAAAGCTTACTGCATTGGCACTTGATGTTGTGACTGAAATCTCAGAAATGCTAGCTTCCTATAACTTGACTTTGAATATGAAACCTACCTCTCGCCGTCTCCTTATTGATTTGGACAAAGATGGTTATCCAATTTGGATGTCCATTAAAGATCGCAAGCTCTTGGCTAATAGAGATTTAGTGATAAAACCCAATGTAGTTGTTGCCAAAGATGGGAGTGGCCAATTTAAGAATGTTGTTGATGCTATTAATGCATACCCAAAGAAACATAAAGGCAGATACATTATTTATGTTAAAGCTGGAACATATGATGAGTATATCACTGTTGACAAGAAGAAAACCAATATTCTCTTGTATGGTGATGGCCCTACAAAGACCATTATCACTGGTAGCAAGAACTTTAAGGATGCGACTGAAGCAGAAAATTTCATAGCCAAATCAATTGCATTCGAGAACACTGCTGGTCCAGAAGGTCACCAAGCAGTGGCACTTCGCGTACAAGGTGATCGTTCAACGTTCTTCGATTGCGCCATGCATGGTTACCAAGACACTCTATACGCCCATGCACACCGCCAATTCTACCGCAACTGCGAAATCTCAGGAACAGTGGATTTCATATTTGGCTACTCAACCACATTAATCCAAAACTCGAAGATCATAGTTAGAAAGCCAGGTCCAAATCAACAAAACATAGTGGTAGCTGATGGCACAATACAAAAGAACATGCCAACAGGAGTAGTCCTACAGAATTGTGAGATAATCCCAGAGAAGAGTCTTATCCCTGATAGATTGAATGTGAAGTCCTATTTGGCAAGGCCATGGAAGGCATACTCTAGGGCAATTTTTATTGAAAATACAATTGGTGATTTTATTCAACCAGATGGGTTTCTTCCATGGCAAGGAAACCAATTCCTTAATACTTGTTACTTTGCTGAGTATGGTAACAATGGTGTTGGTGGTGATGCTAAAAATAGAGTCAAGTGGGGTCGTGGGGTCCTTCAAAAAAATGTTGCTGCTCTATACACTGCTGAACAATGGTTACAAGCTAATACATGGTTGCCTGCAACTGGTATACCTTACCAAACTGGTTTTACGAGAGCTTGA 1263 0.3959 MQNLSHPNKGHFLADIGKKLNSISHIMLMFLLKTNICLRQRKYKNLIGSLDKVEKLTALALDVVTEISEMLASYNLTLNMKPTSRRLLIDLDKDGYPIWMSIKDRKLLANRDLVIKPNVVVAKDGSGQFKNVVDAINAYPKKHKGRYIIYVKAGTYDEYITVDKKKTNILLYGDGPTKTIITGSKNFKDATEAENFIAKSIAFENTAGPEGHQAVALRVQGDRSTFFDCAMHGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSTTLIQNSKIIVRKPGPNQQNIVVADGTIQKNMPTGVVLQNCEIIPEKSLIPDRLNVKSYLARPWKAYSRAIFIENTIGDFIQPDGFLPWQGNQFLNTCYFAEYGNNGVGGDAKNRVKWGRGVLQKNVAALYTAEQWLQANTWLPATGIPYQTGFTRA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0446 420 Gene3D - 113 417 IPR012334 -
Lal24g0446 420 SUPERFAMILY Pectin lyase-like 114 415 IPR011050 -
Lal24g0446 420 Pfam Pectinesterase 118 402 IPR000070 GO:0030599|GO:0042545
Lal24g0446 420 PANTHER PECTINESTERASE 47 418 - -
Lal24g0446 420 ProSitePatterns Pectinesterase signature 2. 252 261 IPR033131 -
Lal24g0446 420 PANTHER PECTINESTERASE 47 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0446 Lal-Chr24 3136250 3138178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0446 49 420 Carbohydrate Esterase AT2G26450 47.532 2.42e-113 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0446 K01051 - gmx:100820142 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0211 5 1823934 1826219 Lal24g0446 24 3136250 3138178 PCT
Lal24g0446 24 3136250 3138178 Lal5g0212 5 1829651 1832106 PCT
Lal24g0446 24 3136250 3138178 Lal18g0398 18 3380160 3382263 PCT