Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0444 ATGGAAGCTAGATTTGGAGCAGAAGCTTATCATTTTTATGGTGTGGGCCCTTCCAATGATTTGAGGAGTTTAGGGAAGAGATCCACAGAGTGGGATTTGAATGAGTGGAGATGGGATGGTGATCTGTTTTTAGCTAGCCGAGTGAATCCGAAGGCGGCTAGTGGTGTAGGTCAGCAATTTTTCCCTATCAGGTCCGGAACCCCCAACGCTGGGGGTTCCGGTCCCACCAACAGTTCTTCTTCGGGTTCCGAGGAAGAAGATCTTGAGAATAAAAAAGGGAACAAGGAAGGGGAGAGGAAAAGGAGGGTAATTGTGCTTCAGGATGATGGTTTGAATGAGGAAGTGGGTACCCTTAGCTTAAAGCTTGGTGGCCATGGAGAACCGTTGGCGTATAGGGATATTGCGAGCTGGGATGGTGTTAATGGGAAGAAAAGCAGAGTGGCTGGAGGTACTTTGAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGACCAAAGCGAAAGATTATCACCGGCGTCATAAAGTTTGTGAAGTTCACTCCAAGGCTACTAAGGCGCTTGTGGGAAATGCAATGCAGAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGTTGTCGAAGACGTTTGGCAGGCCATAATAAACGTAGAAGGAAAACAAATCAGGAAGCTGCTCCGAATGGAAGTACACTCAATGATGATCAGACTAGCAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATACTGACAGGTCAGAACAGGCTACAGATCAGGATATGCTAACTCATCTTCTAAGGAGTCTTGCTAGTCCGAATGGTGAACAGGGGAGAAAGAACTTGTCTAACCTTTTGCGGGAACCAGAGAATTTGTTGAAAGAAGGTGGTTCATCTGGGAAGTCAGAGATGGTTTCAACTTTATTCTCTAATGGTTCTCAAGGCTCTCCAACTGCTATAACACAACATCAAATAGCATCTATGAGTAAAATGCAACAAGTAATGCATACTCATGCTGCTAGGGTTACTGATCATCAAACTATATCTTCTGCAAAGCCCATCATTACAAACAGTCCTCCAGCTCACTCAGAAGCCAGGGACAGTTCTGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCACAGAAGATCTAGAAAGATTGCCCATCTCTACAAATCATGGGACCATCTCTCTTGACTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCCCAAATAAGTAGAAATTCCGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGTGAAGGGCAGAGCCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGACTTTCCTCTTGTACTTAGAACCCAGATTCTTGACTGGTTATCCCACAGTCCCACTGATATTGAAAGCTACATACGGCCTGGCTGTATTGTTTTGACCATTTATCTGCGCCAGGATGAGGCTGTGTGGGATGAACTTTGCTACAATCTGACTTCCAGTTTGAAAAGGCTGCTGGGTGTCTCCGAGGATACTTTTTGGAGAAGTGGATGGGTTCACATCAGGGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAAGTTGTCATAGATAAATCCCTACCTTTCAGAGGTAACAATTATAGCAAGATTTTGAGTGTCAATCCAATCGCTGTACCTGCATCGAGGAAAGCTCAATTTTCAGTTAAGGGTGTGAACTTGATATGCCCTGCCACTAGGTTAATATGTGCTTTAGAAGGGAAATATCTTGTTTGTGAAGATGCTCATGAGTCAATGGATCGACACTCGAAGGAGCTTGATGAGATCCAGTGCATCGAGTTTTCATGTTCTGTGCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCCTTTATAGTCGTTGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAACCTCTACTAGAATTGAGTGAAACTGACCTAGATATTGATGGAACTGGAAAAATTGAAGCCAAAAGTCAAGCCTTGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAACCAATTGAAATCTAGGATGGTTCACTTTAACTCTAGTGCAGAACTCTTTCCATTAAAACGCTTCAAGTGGCTCATGGAGTTTTCTATGGACCATGATTGGTGTGCAGTGGTCAAAAAGCTATTGAACCTGCTGCTTAATGGAACTGTGAGTTCAGGAGATCACCCTTCCCTGTATCTTGCACTTTCAGAGATGGCCCTCCTTCACAGAGCTGTAAGGAGGAATAGCAAGCAGTTAGTGGACCTGCTTTTGAGATATGTTCCAGAGAATGTTTCTGATACACTAGGAATTGAAGACAAGTTACTAGTTGGAGAGAATGGAAGGTTGTTTAGACCTGATGTTGCTGGTCCCGCTGGTTTGACACCCCTCCATATAGCAGCTGGGAAAGATGGCTCTGAGGATGTATTGGATGCTTTAACTAATGATCTTTGCATGGTGGGAATCAAAGCGTGGAAGAACGCTCGTGACAGCACAGGCTCCACGCCTGAGGATTATGCACGCTTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAGAAAATTAATAAGAGACAAGGAGCATCTCATGTGGTGGTTGAGATTCCCAGCAATGTGACAGAAAACACTACAAACCAGAAGCAAAATGAGTCATCCACTACCTTTGAGATCGGAAAGGCTGAAGTAAAACGTGGGCAAGGTATCTGCAAAGTTTGTGATACTAAATTGTCTTGTAGAACTGCAGTAGGCAAGTCTTTGGTATATAGACCTGCAATGCTCTCAATGGTGGCCGTAGCAGCAGTCTGTGTCTGCGTGGCTCTTCTGTTTAAGAGCTCGCCGGTAGTTTTATATGTATTCCAACCCTTCAGATGGGAGTCATTGGAATTTGGTACAAGCTAA 3015 0.4368 MEARFGAEAYHFYGVGPSNDLRSLGKRSTEWDLNEWRWDGDLFLASRVNPKAASGVGQQFFPIRSGTPNAGGSGPTNSSSSGSEEEDLENKKGNKEGERKRRVIVLQDDGLNEEVGTLSLKLGGHGEPLAYRDIASWDGVNGKKSRVAGGTLNRAVCQVEDCGADLTKAKDYHRRHKVCEVHSKATKALVGNAMQRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQEAAPNGSTLNDDQTSSYLLISLLKILSNMHTDRSEQATDQDMLTHLLRSLASPNGEQGRKNLSNLLREPENLLKEGGSSGKSEMVSTLFSNGSQGSPTAITQHQIASMSKMQQVMHTHAARVTDHQTISSAKPIITNSPPAHSEARDSSAGQIKMNNFDLNDIYIDSDDGTEDLERLPISTNHGTISLDYPWAQQDSHQSSPPQISRNSDSASAQSPSSSSGEGQSRTDRIVFKLFGKEPNDFPLVLRTQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEAVWDELCYNLTSSLKRLLGVSEDTFWRSGWVHIRVQHQIAFIFNGQVVIDKSLPFRGNNYSKILSVNPIAVPASRKAQFSVKGVNLICPATRLICALEGKYLVCEDAHESMDRHSKELDEIQCIEFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLELSETDLDIDGTGKIEAKSQALDFIHEMGWLLHRNQLKSRMVHFNSSAELFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLNGTVSSGDHPSLYLALSEMALLHRAVRRNSKQLVDLLLRYVPENVSDTLGIEDKLLVGENGRLFRPDVAGPAGLTPLHIAAGKDGSEDVLDALTNDLCMVGIKAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGASHVVVEIPSNVTENTTNQKQNESSTTFEIGKAEVKRGQGICKVCDTKLSCRTAVGKSLVYRPAMLSMVAVAAVCVCVALLFKSSPVVLYVFQPFRWESLEFGTS 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0444 1004 Pfam SBP domain 157 223 IPR004333 GO:0003677
Lal24g0444 1004 MobiDBLite consensus disorder prediction 213 236 - -
Lal24g0444 1004 MobiDBLite consensus disorder prediction 359 378 - -
Lal24g0444 1004 MobiDBLite consensus disorder prediction 57 101 - -
Lal24g0444 1004 SUPERFAMILY Ankyrin repeat 756 888 IPR036770 -
Lal24g0444 1004 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1003 - -
Lal24g0444 1004 Gene3D - 148 211 IPR036893 GO:0003677|GO:0005634
Lal24g0444 1004 Gene3D - 748 907 IPR036770 -
Lal24g0444 1004 MobiDBLite consensus disorder prediction 84 101 - -
Lal24g0444 1004 ProSiteProfiles Zinc finger SBP-type profile. 154 224 IPR004333 GO:0003677
Lal24g0444 1004 MobiDBLite consensus disorder prediction 60 83 - -
Lal24g0444 1004 MobiDBLite consensus disorder prediction 419 452 - -
Lal24g0444 1004 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1003 IPR044817 GO:0003677
Lal24g0444 1004 SUPERFAMILY SBT domain 155 228 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0444 Lal-Chr24 3116054 3122216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0444 1 1004 SBP-box Gene Family AT3G60030 52.729 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal24g0444 SBP 4.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0444 - - lang:109336004 1663.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0444 24 3116054 3122216 Lal24g0444 24 3116054 3122216 ECH
Lal12g0543 12 3880615 3887250 Lal24g0444 24 3116054 3122216 LSH
Lal13g0549 13 3569087 3578478 Lal24g0444 24 3116054 3122216 LSH