LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal24g0444	ATGGAAGCTAGATTTGGAGCAGAAGCTTATCATTTTTATGGTGTGGGCCCTTCCAATGATTTGAGGAGTTTAGGGAAGAGATCCACAGAGTGGGATTTGAATGAGTGGAGATGGGATGGTGATCTGTTTTTAGCTAGCCGAGTGAATCCGAAGGCGGCTAGTGGTGTAGGTCAGCAATTTTTCCCTATCAGGTCCGGAACCCCCAACGCTGGGGGTTCCGGTCCCACCAACAGTTCTTCTTCGGGTTCCGAGGAAGAAGATCTTGAGAATAAAAAAGGGAACAAGGAAGGGGAGAGGAAAAGGAGGGTAATTGTGCTTCAGGATGATGGTTTGAATGAGGAAGTGGGTACCCTTAGCTTAAAGCTTGGTGGCCATGGAGAACCGTTGGCGTATAGGGATATTGCGAGCTGGGATGGTGTTAATGGGAAGAAAAGCAGAGTGGCTGGAGGTACTTTGAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGACCAAAGCGAAAGATTATCACCGGCGTCATAAAGTTTGTGAAGTTCACTCCAAGGCTACTAAGGCGCTTGTGGGAAATGCAATGCAGAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGTTGTCGAAGACGTTTGGCAGGCCATAATAAACGTAGAAGGAAAACAAATCAGGAAGCTGCTCCGAATGGAAGTACACTCAATGATGATCAGACTAGCAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATACTGACAGGTCAGAACAGGCTACAGATCAGGATATGCTAACTCATCTTCTAAGGAGTCTTGCTAGTCCGAATGGTGAACAGGGGAGAAAGAACTTGTCTAACCTTTTGCGGGAACCAGAGAATTTGTTGAAAGAAGGTGGTTCATCTGGGAAGTCAGAGATGGTTTCAACTTTATTCTCTAATGGTTCTCAAGGCTCTCCAACTGCTATAACACAACATCAAATAGCATCTATGAGTAAAATGCAACAAGTAATGCATACTCATGCTGCTAGGGTTACTGATCATCAAACTATATCTTCTGCAAAGCCCATCATTACAAACAGTCCTCCAGCTCACTCAGAAGCCAGGGACAGTTCTGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCACAGAAGATCTAGAAAGATTGCCCATCTCTACAAATCATGGGACCATCTCTCTTGACTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCCCAAATAAGTAGAAATTCCGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGTGAAGGGCAGAGCCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGACTTTCCTCTTGTACTTAGAACCCAGATTCTTGACTGGTTATCCCACAGTCCCACTGATATTGAAAGCTACATACGGCCTGGCTGTATTGTTTTGACCATTTATCTGCGCCAGGATGAGGCTGTGTGGGATGAACTTTGCTACAATCTGACTTCCAGTTTGAAAAGGCTGCTGGGTGTCTCCGAGGATACTTTTTGGAGAAGTGGATGGGTTCACATCAGGGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAAGTTGTCATAGATAAATCCCTACCTTTCAGAGGTAACAATTATAGCAAGATTTTGAGTGTCAATCCAATCGCTGTACCTGCATCGAGGAAAGCTCAATTTTCAGTTAAGGGTGTGAACTTGATATGCCCTGCCACTAGGTTAATATGTGCTTTAGAAGGGAAATATCTTGTTTGTGAAGATGCTCATGAGTCAATGGATCGACACTCGAAGGAGCTTGATGAGATCCAGTGCATCGAGTTTTCATGTTCTGTGCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCCTTTATAGTCGTTGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAACCTCTACTAGAATTGAGTGAAACTGACCTAGATATTGATGGAACTGGAAAAATTGAAGCCAAAAGTCAAGCCTTGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAACCAATTGAAATCTAGGATGGTTCACTTTAACTCTAGTGCAGAACTCTTTCCATTAAAACGCTTCAAGTGGCTCATGGAGTTTTCTATGGACCATGATTGGTGTGCAGTGGTCAAAAAGCTATTGAACCTGCTGCTTAATGGAACTGTGAGTTCAGGAGATCACCCTTCCCTGTATCTTGCACTTTCAGAGATGGCCCTCCTTCACAGAGCTGTAAGGAGGAATAGCAAGCAGTTAGTGGACCTGCTTTTGAGATATGTTCCAGAGAATGTTTCTGATACACTAGGAATTGAAGACAAGTTACTAGTTGGAGAGAATGGAAGGTTGTTTAGACCTGATGTTGCTGGTCCCGCTGGTTTGACACCCCTCCATATAGCAGCTGGGAAAGATGGCTCTGAGGATGTATTGGATGCTTTAACTAATGATCTTTGCATGGTGGGAATCAAAGCGTGGAAGAACGCTCGTGACAGCACAGGCTCCACGCCTGAGGATTATGCACGCTTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAGAAAATTAATAAGAGACAAGGAGCATCTCATGTGGTGGTTGAGATTCCCAGCAATGTGACAGAAAACACTACAAACCAGAAGCAAAATGAGTCATCCACTACCTTTGAGATCGGAAAGGCTGAAGTAAAACGTGGGCAAGGTATCTGCAAAGTTTGTGATACTAAATTGTCTTGTAGAACTGCAGTAGGCAAGTCTTTGGTATATAGACCTGCAATGCTCTCAATGGTGGCCGTAGCAGCAGTCTGTGTCTGCGTGGCTCTTCTGTTTAAGAGCTCGCCGGTAGTTTTATATGTATTCCAACCCTTCAGATGGGAGTCATTGGAATTTGGTACAAGCTAA	3015	0.4368	MEARFGAEAYHFYGVGPSNDLRSLGKRSTEWDLNEWRWDGDLFLASRVNPKAASGVGQQFFPIRSGTPNAGGSGPTNSSSSGSEEEDLENKKGNKEGERKRRVIVLQDDGLNEEVGTLSLKLGGHGEPLAYRDIASWDGVNGKKSRVAGGTLNRAVCQVEDCGADLTKAKDYHRRHKVCEVHSKATKALVGNAMQRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQEAAPNGSTLNDDQTSSYLLISLLKILSNMHTDRSEQATDQDMLTHLLRSLASPNGEQGRKNLSNLLREPENLLKEGGSSGKSEMVSTLFSNGSQGSPTAITQHQIASMSKMQQVMHTHAARVTDHQTISSAKPIITNSPPAHSEARDSSAGQIKMNNFDLNDIYIDSDDGTEDLERLPISTNHGTISLDYPWAQQDSHQSSPPQISRNSDSASAQSPSSSSGEGQSRTDRIVFKLFGKEPNDFPLVLRTQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEAVWDELCYNLTSSLKRLLGVSEDTFWRSGWVHIRVQHQIAFIFNGQVVIDKSLPFRGNNYSKILSVNPIAVPASRKAQFSVKGVNLICPATRLICALEGKYLVCEDAHESMDRHSKELDEIQCIEFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLELSETDLDIDGTGKIEAKSQALDFIHEMGWLLHRNQLKSRMVHFNSSAELFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLNGTVSSGDHPSLYLALSEMALLHRAVRRNSKQLVDLLLRYVPENVSDTLGIEDKLLVGENGRLFRPDVAGPAGLTPLHIAAGKDGSEDVLDALTNDLCMVGIKAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGASHVVVEIPSNVTENTTNQKQNESSTTFEIGKAEVKRGQGICKVCDTKLSCRTAVGKSLVYRPAMLSMVAVAAVCVCVALLFKSSPVVLYVFQPFRWESLEFGTS	1004

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal24g0444	1004	Pfam	SBP domain	157	223	IPR004333	GO:0003677
	Lal24g0444	1004	MobiDBLite	consensus disorder prediction	213	236	-	-
	Lal24g0444	1004	MobiDBLite	consensus disorder prediction	359	378	-	-
	Lal24g0444	1004	MobiDBLite	consensus disorder prediction	57	101	-	-
	Lal24g0444	1004	SUPERFAMILY	Ankyrin repeat	756	888	IPR036770	-
	Lal24g0444	1004	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED	17	1003	-	-
	Lal24g0444	1004	Gene3D	-	148	211	IPR036893	GO:0003677\|GO:0005634
	Lal24g0444	1004	Gene3D	-	748	907	IPR036770	-
	Lal24g0444	1004	MobiDBLite	consensus disorder prediction	84	101	-	-
	Lal24g0444	1004	ProSiteProfiles	Zinc finger SBP-type profile.	154	224	IPR004333	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal24g0444	Lal-Chr24	3116054	3122216	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal24g0444	1	1004	SBP-box Gene Family	AT3G60030	52.729	0.0	936

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Lal24g0444		SBP	4.6e-19	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal24g0444	-		-	lang:109336004	1663.66

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal24g0444	24	3116054	3122216	Lal24g0444	24	3116054	3122216	ECH
	Lal12g0543	12	3880615	3887250	Lal24g0444	24	3116054	3122216	LSH
	Lal13g0549	13	3569087	3578478	Lal24g0444	24	3116054	3122216	LSH

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