Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0435 ATGATGAGAAGTTTATTATCAGATTGTGGTTCATCAGCAACGTATGGAAGTGAAGAACACATGGTAATGAAGAAAGGTTCATGGACAGAGGAAGAAGATTCTGTTCTAATAAACTACGTTAACGTCTATGGCGAAGGTCACTGGAACTCCATCGCTAGCATTGCAGGTCTAAAGAGAACTGGCAAAAGCTGCAGATTAAGATGGTTAAACTACTTGCGTCCAAATGTTCGACGTGGAAATATCACTCTCCATGAACAGCTTTTGATTCTTTACCTTTATTTCCGTTGGGGAAATCGGTGGTCTAAAATAGCAGAAGAATTGCCTGGGAGAACAGACAATGAAATCAAGAACTATTGGAGGACGAGAGTGTTAAAGCAGGCAAAGCAATTAAAATGTGATGTGAATAGCAAACAATTCAGAGACACTATGCGTTTGGTATGGATTCCCCGTCTTATGGAGCAGATTCAAGCCTCTTCTTCACACGGTCATAGCCAAACCACCATGTTTAGCAACACTCAAACCCACACTGAACCTTGTGTAACCATACCCACCATGTTTTCAGTGCCTACATCAGATAACATATCTTACAATTTGATGGGTGGTGGTTGTAGTTTTTCATCATCATTAGATAGTTTAGAAAAAGGATCCATATCAACCCCATGCATATTGCAGCAGAAGAACTACTCGAAAGTGGAAGAAGTTGAACCAAGCACTGATTTTGGTGGTGCAGATTTGTGGACTGATGAAAATATATGCTTCTTGCAACAGCTTCTTGCAGATGACTAA 786 0.4033 MMRSLLSDCGSSATYGSEEHMVMKKGSWTEEEDSVLINYVNVYGEGHWNSIASIAGLKRTGKSCRLRWLNYLRPNVRRGNITLHEQLLILYLYFRWGNRWSKIAEELPGRTDNEIKNYWRTRVLKQAKQLKCDVNSKQFRDTMRLVWIPRLMEQIQASSSHGHSQTTMFSNTQTHTEPCVTIPTMFSVPTSDNISYNLMGGGCSFSSSLDSLEKGSISTPCILQQKNYSKVEEVEPSTDFGGADLWTDENICFLQQLLADD 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0435 261 CDD SANT 82 121 IPR001005 -
Lal24g0435 261 Gene3D - 82 123 - -
Lal24g0435 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 230 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal24g0435 261 CDD SANT 27 72 IPR001005 -
Lal24g0435 261 SMART sant 24 74 IPR001005 -
Lal24g0435 261 SMART sant 77 125 IPR001005 -
Lal24g0435 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Lal24g0435 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Lal24g0435 261 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Lal24g0435 261 PANTHER - 17 230 - -
Lal24g0435 261 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Lal24g0435 261 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Lal24g0435 261 Gene3D - 23 78 - -
Lal24g0435 261 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Lal24g0435 261 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0435 Lal-Chr24 3089406 3090833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0435 18 261 MYB Transcription Factor Family AT2G47190 47.860 1.96e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g0435 Myb_DNA-binding 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0435 K09422 - gmx:100777932 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0435 24 3089406 3090833 Lal24g0435 24 3089406 3090833 ECH