Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0434 ATGGTTCCAAAAACCCATTTCTACGTAATTCTATTTCTTCTTTCAACTTTATACATCACTTCTGGTTCCAATAAACAGACCAATTATGACAATTGGGTATCTTGGAACGTCAAGAATTACCAGAAAAATACCACTTTAGAAATGAAATGGAAGGGTCAAGATTTGAATCTGAGGAAGGCTGAGAGTAACAAAGTTAGAATAACAGTTAAACAAGACGGTTCTGGTGATTTCAAGACAATTAGAGAAGCTCTTAATAGCATTCCACCATACAATACTAGAAGAGTAACAATGTTGATTGCACCAGGTGTTTATAGGGAGAAGGTTATGATTCCCAGAACTAAGCCTTTCTTAACATTCTTAGGAGACGCAAGGGATCCACCAACCATTACTGGAAATGATACAGCTTCTACCACTGGAAGAACATTTCAGAGTGCAACTGTTGCTGTAGATGCTACCTACTTTATAGCCATCAACATAAAATTTGAGAACAGTGCTCCGCATGAGATTGGATCTATGGGAGGACAAGGAGTGGCGCTTCGCATCTCAGGAACTAAAGCTGCTTTTTATAATTGCACTTTCTATGGAACTCAAGACACTTTATATGATCATAAAGGACTTCACTACTTCAACAACTGCTTTATTCAAGGCTCTGTTGATTTCATCTTTGGCTCTGGCAGATCCCTTTACGAGAACTGCAATCTAAACTCCATAACCAAGAAGGTTGCATCCATTACTGCTCAAAAGCGTACAAACTCGTCACTGGAAAGTGGATTTTCGTTCAAAAACAGTGTAGTAACAGGGAGTGGGCAAGTTTATCTAGGAAGAGCATGGGGAGATTATTCCAGAGTTGTTTTCTCTTACACCTACATGGACAACATAGTCATCTCAGAAGGATGGAGTGATTGGGGTGATCAAAAACGCGACATTGGAGTATATTATGGAGAATACAAGTGTAGTGGGCCAGGGGCTAACTTGACTGGAAGAGTGCCATGGGCTAGAATGCTTACAGACGAAGAGGCTAAGCCTTTTATTGGGGTCAACTTTATTGAAGGAAACACTTGGCTTATTAGCCCATAA 1077 0.3993 MVPKTHFYVILFLLSTLYITSGSNKQTNYDNWVSWNVKNYQKNTTLEMKWKGQDLNLRKAESNKVRITVKQDGSGDFKTIREALNSIPPYNTRRVTMLIAPGVYREKVMIPRTKPFLTFLGDARDPPTITGNDTASTTGRTFQSATVAVDATYFIAINIKFENSAPHEIGSMGGQGVALRISGTKAAFYNCTFYGTQDTLYDHKGLHYFNNCFIQGSVDFIFGSGRSLYENCNLNSITKKVASITAQKRTNSSLESGFSFKNSVVTGSGQVYLGRAWGDYSRVVFSYTYMDNIVISEGWSDWGDQKRDIGVYYGEYKCSGPGANLTGRVPWARMLTDEEAKPFIGVNFIEGNTWLISP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0434 358 ProSitePatterns Pectinesterase signature 2. 214 223 IPR033131 -
Lal24g0434 358 PANTHER PECTINESTERASE 20 356 - -
Lal24g0434 358 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 356 - -
Lal24g0434 358 Gene3D - 60 357 IPR012334 -
Lal24g0434 358 SUPERFAMILY Pectin lyase-like 65 355 IPR011050 -
Lal24g0434 358 Pfam Pectinesterase 67 352 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0434 Lal-Chr24 3083737 3086624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0434 67 355 Carbohydrate Esterase AT5G47500 48.658 8.28e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0434 K01051 - qsu:112011696 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0434 24 3083737 3086624 Lal24g0434 24 3083737 3086624 ECH
Lal11g1183 11 15614156 15618006 Lal24g0434 24 3083737 3086624 PCT
Lal24g0434 24 3083737 3086624 Lal11g1183 11 15614156 15618006 PCT