Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0423 ATGAATCTCCACTTATCAATGCTTTTGCGACCTTCATCTTTCGTTATTCTTCAGGCATATGCTGCGTTGGTAGTGCTTTTCTCATTGACGCTATGCTGGTTTGTCATGGTCACAAACATGGAAAAACATGTTAAGTTGAATCAAGAAAAAATTGTGATTGACACTATTAGCAATCAACATGTACAATTATATTTAGCTACCAAAGATGGAGAAGTTCTATTACAAGGGATCGAGAATACTCGTTTGGTCGTTTCTAATGACACAGTTTCATTCCAATCTTTGAATCAAAATGGAAATTTGATAAGCAATGTGGGTAGTGTATCTTGCAAGAATAAAGCCAATGCTTCTAGTTTGAATATTTGGGATATTGAATATTTAATTCACTGCCACCCCATTGATATTATGGGGAAAAAATCGGTATATGTTTTAGCCGTGCCACAAAATGGATCATCAGTTAACATTGATCTGAATAATTATAAGAAAAAAGGATTGAAAGTGTTGATTGCAATGATTGTAATGATATTAATTGCAATTTTGAGTTTTCTATTCATAAATGTTAGAGGTACAAGGAGAGAAATGCAATTATGTGGCTCACTGATAAAACAGATGGAAGCAACACAACAAGCTGAGAGAAAGAATATGAATAAGAGTCTTGCTTTTGCTAGTGCCAGCCATGATGTTCGCACTTCTCTAGCTGGTCTTACTGGTTTGATAGAAATGTCATATGAGTTAGTAACCCCACATTCTGAATTGGAAACCAATCTTAAACAAATGAACAATTGTACCAGAGATTTACTAGGATTGTTGAATTCTATACTTGACACAAGCAAAATTGAGGCAGGAAAAATGCATCTTGAAGAAGAAGACTTTGATATTTCCTATCTGTTGGAAGATGTAGTTGATTTATACCATCCAGTGGCTATGAAAAAAGGTGTAGATATTGTATTGGACCCTTGTAATGGTTCTCTAATGAGATATTCATCAGTGAAAGGTGACAGAGGAAAACTAAAGCAAGTTTTGTGTAACTTACTGAGCAATGCTGTTAAATTTACTGATGAGGGTCACATAGCAGTTAGAGCATGGGCTCAGAAGCCAAACTTGCCGAACTCAATAATGGCTACTAACCGATATAGCTTCACTGAATACTTATCATGCTTATGTTATAAGAAAAGTGAAACAAAAAATGACATAGAAGCAGCCAAGGTTCCAATCCAACAAGATCCTTATTCAATAGATGTTACTTTTGAAGTGGATGATACAGGAAAAGGAATTCCTAAAGAGAAGTACAAGTCTGTGTTTGAGAATTATGTCCAAGTTAAGGAAACTGCTCTTGGCAGAGGAGGAACTGGTTTGGGACTTGGGATTGTGCAATCCTTGGTGCGTTTGATGCATGGAGACATTGGAATTATGGACAAGGATATTGGAGAAAAGGGAACCTGCTTTAGGTTCAATGTGGTCCTAAGTGTATGTGAGACAGTGACTAATGTTAGCACAAAGGAAGGTTCTGAGCATGCATCAGGTGACAGAAACAATGCCCAAGGACTAATCATTAGAACTACTAGTTCTGGTTCAAGCATTTGTAATTCCTTGAGTCCCAAGTTACATATTTACAGCACTACTCGAAGGCCACAAGCTTCGCATGTCGTTCTTTTGATCGTAGACAAAGAGCGCCGAAGAATTTCACAAAGGTTCATGGAGAGTTTAGGAATTGAAGTTAAGGTTGTGAGGCATTGGAAGCATTTGTTTGAAACTCTAAAACATATTAATCAGAAGGGTATCCATTCAAGCAACCAGAGTTCACCAGTATCTTCAGAATTCAGTTTTAGGTCCATATCTCATAGTTCTTTTGCAAGAACCAAAGGATTTCCTTTGAGTTCAATGGATGGAACTGAGTCAATGCTTCCAGTTCTCAAGAAGAATGATACAATTGGAGCTGCACCAGGTTTCATTCTGATTGTAATTGATGCAAATGCAGGACCATTTTCTGAACTTTGCAGGGTTGTATCTATCTTTAGAAAAGGCCTTTATAACCCATGTAAGGTTGTTTGGTTAAATAAGCCACTTTTTCATGGTAACAATTTTAAGACCACCCTTAACAAGGATTTGCTTGATCCAAATGACATTGTTATATCAAAACCTTTTCATGGTACACGTTTGTTCCAAGTTATTAAGCTTCTTCCTGAGTATGGTGGTGCATGGAAAAGTAGTTTTCATAGATCTAAGAAAGAAAATGGAATTGAACAAATTGGTGGAAAGATTTGTAGGGTTTCAAGCTTATCAAAACAGAAGACCCCTTTGTTGGATAGATCAAAAAGTGAACCAAATATTGATGGAAATTCATTTGAGAGTGTTGAACAAATGAAAAAAGGAACAGAAGATTCCCTTGGAGGAACACAAGAATGTGGAGACTCAAGCAATAATAAATCATTGAGTGGTAAGAGAATTTTGGTTGTTGAGGACAATGCCTTGTTACGCAAGCTAGCTTTGGCTACATTGATTCCACTTGGTGTAACTATTGAGCAATGTGAGAATGGTGAACAAGCTGTGCAGTTAATTGAAGAGGGTTTGGCTAGAAGGGATATACCTTATCCTCCTTATGATTACATCTTAATGGACTGTGAGATGCCAGTAATGGATGGGTTTGAGGCAACAAAACAGATTCGTGAAATGGAAAGGCCCTATGGTTTTCACATTCCTATAATTGCATTAACTGCTCACACTGATAATGTAGCAACAAAAGATGGAATGGACTTTCATTTATTGAAGCCCATTAAGAGACAGAATGTACTTGAAGCCATCAGATATATACATGCTATGCTACACACTGAAACTACTTAA 2838 0.3682 MNLHLSMLLRPSSFVILQAYAALVVLFSLTLCWFVMVTNMEKHVKLNQEKIVIDTISNQHVQLYLATKDGEVLLQGIENTRLVVSNDTVSFQSLNQNGNLISNVGSVSCKNKANASSLNIWDIEYLIHCHPIDIMGKKSVYVLAVPQNGSSVNIDLNNYKKKGLKVLIAMIVMILIAILSFLFINVRGTRREMQLCGSLIKQMEATQQAERKNMNKSLAFASASHDVRTSLAGLTGLIEMSYELVTPHSELETNLKQMNNCTRDLLGLLNSILDTSKIEAGKMHLEEEDFDISYLLEDVVDLYHPVAMKKGVDIVLDPCNGSLMRYSSVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRAWAQKPNLPNSIMATNRYSFTEYLSCLCYKKSETKNDIEAAKVPIQQDPYSIDVTFEVDDTGKGIPKEKYKSVFENYVQVKETALGRGGTGLGLGIVQSLVRLMHGDIGIMDKDIGEKGTCFRFNVVLSVCETVTNVSTKEGSEHASGDRNNAQGLIIRTTSSGSSICNSLSPKLHIYSTTRRPQASHVVLLIVDKERRRISQRFMESLGIEVKVVRHWKHLFETLKHINQKGIHSSNQSSPVSSEFSFRSISHSSFARTKGFPLSSMDGTESMLPVLKKNDTIGAAPGFILIVIDANAGPFSELCRVVSIFRKGLYNPCKVVWLNKPLFHGNNFKTTLNKDLLDPNDIVISKPFHGTRLFQVIKLLPEYGGAWKSSFHRSKKENGIEQIGGKICRVSSLSKQKTPLLDRSKSEPNIDGNSFESVEQMKKGTEDSLGGTQECGDSSNNKSLSGKRILVVEDNALLRKLALATLIPLGVTIEQCENGEQAVQLIEEGLARRDIPYPPYDYILMDCEMPVMDGFEATKQIREMERPYGFHIPIIALTAHTDNVATKDGMDFHLLKPIKRQNVLEAIRYIHAMLHTETT 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0423 945 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 487 IPR003594 -
Lal24g0423 945 Pfam His Kinase A (phospho-acceptor) domain 218 281 IPR003661 GO:0000155|GO:0007165
Lal24g0423 945 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 270 485 IPR036890 -
Lal24g0423 945 MobiDBLite consensus disorder prediction 786 808 - -
Lal24g0423 945 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 203 283 IPR036097 GO:0000155|GO:0007165
Lal24g0423 945 CDD HisKA 213 277 IPR003661 GO:0000155|GO:0007165
Lal24g0423 945 PANTHER TWO-COMPONENT HISTIDINE KINASE 59 937 - -
Lal24g0423 945 ProSiteProfiles Histidine kinase domain profile. 222 489 IPR005467 -
Lal24g0423 945 Pfam Response regulator receiver domain 815 934 IPR001789 GO:0000160
Lal24g0423 945 ProSiteProfiles Response regulatory domain profile. 814 937 IPR001789 GO:0000160
Lal24g0423 945 SMART HisKA_10 215 281 IPR003661 GO:0000155|GO:0007165
Lal24g0423 945 SMART HKATPase_4 331 489 IPR003594 -
Lal24g0423 945 SMART REC_2 813 933 IPR001789 GO:0000160
Lal24g0423 945 SUPERFAMILY CheY-like 811 938 IPR011006 -
Lal24g0423 945 Gene3D - 282 494 IPR036890 -
Lal24g0423 945 PANTHER HISTIDINE KINASE CKI1 59 937 - -
Lal24g0423 945 CDD REC_hyHK_CKI1_RcsC-like 815 933 - -
Lal24g0423 945 Gene3D - 202 281 - -
Lal24g0423 945 Gene3D - 796 940 - -
Lal24g0423 945 PRINTS Bacterial sensor protein C-terminal signature 413 427 IPR004358 GO:0016310|GO:0016772
Lal24g0423 945 PRINTS Bacterial sensor protein C-terminal signature 431 441 IPR004358 GO:0016310|GO:0016772
Lal24g0423 945 PRINTS Bacterial sensor protein C-terminal signature 447 465 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0423 Lal-Chr24 3003481 3008305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0423 52 941 Histidine Kinase Gene Family AT2G47430 40.605 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal24g0423 HATPase_c 7.7e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0423 - - lang:109344729 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0423 24 3003481 3008305 Lal24g0423 24 3003481 3008305 ECH