Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0422 ATGGAAGAGGTAGTGTTGTTCGTGGATGATTTAAGATCACTTTCTGAGATTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTTGAAAAGCTTAGAGGCTCCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATTCAGAAATGGTGCGATGAGAAAGGAAATACAGTTTGTGAAATATGTCTCCAGAAATATGAACCTGGATATACAGCAGCTCCAAAGAAATCTTCAATATCTGATGCAGCAATGACAATTAGGGAAAGCCTACAAATTTCAAGGATAGAGCAAGAACCGTTAAACAGAAGAATAGAGGGTATAGTTGAAGGAATAGCAATAGAAAACCGTTACTCTGAATGCACATCTGCTGCAGATAGAAGCGCCTCTTGCTGTAGATCACTGGCTTTAACTTTTACACTCATTTTGCTTTTAAGACATCTATTTGAAGTGCTTTCAAATGGAATTGAAGAATATCCATTTACAATTCTTACTGTGTTCATACTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAGGACTCTGGGAGGCATTCATAAAAGTATTCAGCTTCACTATCATCAGGATTCTGACAATGACACATCAATGTCCGATGAAGATGATGAAGAAAACGAGACATCCAATGTTGCAACTTTAAGACATTCATCATAG 693 0.3709 MEEVVLFVDDLRSLSEISRCRICHEEEFESLKSLEAPCACSGTVKFAHRDCIQKWCDEKGNTVCEICLQKYEPGYTAAPKKSSISDAAMTIRESLQISRIEQEPLNRRIEGIVEGIAIENRYSECTSAADRSASCCRSLALTFTLILLLRHLFEVLSNGIEEYPFTILTVFILRASGIIIPMYIIIRTLGGIHKSIQLHYHQDSDNDTSMSDEDDEENETSNVATLRHSS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0422 230 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Lal24g0422 230 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Lal24g0422 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 78 IPR013083 -
Lal24g0422 230 MobiDBLite consensus disorder prediction 203 230 - -
Lal24g0422 230 Pfam Protein of unknown function (DUF3675) 73 188 IPR022143 -
Lal24g0422 230 CDD RING_CH-C4HC3_MARCH 20 67 - -
Lal24g0422 230 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 226 IPR033275 -
Lal24g0422 230 SMART ringv_2 19 68 IPR011016 GO:0008270
Lal24g0422 230 SUPERFAMILY RING/U-box 18 72 - -
Lal24g0422 230 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0422 Lal-Chr24 2996090 2998936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0422 20 67 C3H Transcription Factor Family AT5G05830 38.462 4.05e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0422 - - gmx:100797029 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0422 24 2996090 2998936 Lal24g0422 24 2996090 2998936 ECH
Lal13g0527 13 3415963 3418500 Lal24g0422 24 2996090 2998936 LSH
Lal3g1369 3 19510331 19513725 Lal24g0422 24 2996090 2998936 PCT
Lal5g0235 5 2036644 2041157 Lal24g0422 24 2996090 2998936 PCT
Lal24g0422 24 2996090 2998936 Lal3g1369 3 19510331 19513725 PCT
Lal24g0422 24 2996090 2998936 Lal5g0235 5 2036644 2041157 PCT