Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0411 ATGGCAAAAGCTAATACTAAGAACAAAAAATCTTCTCCCACTGCTCCCCACCCTCCCTACTTGGAGATGATCACAGATGCAATAACAACATTGAGAGAACGCAAGGGTTCAAGCCAGACATCAATTGCAATGTTCATCGAAGAGAAACACAAAAAATCACTTCCTCCAAATTTCAACAAACTCCTCTCCATTCAGTTGAACAAGTTCGTTAAATCAGAAAAACTCTTGAAAGTGAAAAACTCTTACAAGATCTCTTCCGATTCCACAAAAGAAACCATCCACCAAACCGTAACCGCTACCCCGCCACCAAAACAGAAGGCTAAAAAGAAAACCGTGGAGAAGACTAAGAGCCTGAGTCAGTTGAAGACGCCGGAGGCTCTCAAGAAGGCCACGACAACCACCGCTCAGAAGAAAAGTGCGGTGGTGAAAGTGAAGCGTTTGAGTCAGGTGATGACACCGGAAGGGATTAAGAAGAAGAAACCTAATTTGACACCTGCAAAGAGAAAGAGTACTCCCAAACCAGTTAATCCTACACGGCCCACTAAGAAGACCAGGAAATAA 561 0.4367 MAKANTKNKKSSPTAPHPPYLEMITDAITTLRERKGSSQTSIAMFIEEKHKKSLPPNFNKLLSIQLNKFVKSEKLLKVKNSYKISSDSTKETIHQTVTATPPPKQKAKKKTVEKTKSLSQLKTPEALKKATTTTAQKKSAVVKVKRLSQVMTPEGIKKKKPNLTPAKRKSTPKPVNPTRPTKKTRK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0411 186 MobiDBLite consensus disorder prediction 1 20 - -
Lal24g0411 186 Gene3D - 9 117 IPR036388 -
Lal24g0411 186 PANTHER HISTONE H1 4 184 - -
Lal24g0411 186 MobiDBLite consensus disorder prediction 84 186 - -
Lal24g0411 186 MobiDBLite consensus disorder prediction 117 139 - -
Lal24g0411 186 CDD H15 14 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal24g0411 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 16 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal24g0411 186 SMART h15plus2 14 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal24g0411 186 SUPERFAMILY "Winged helix" DNA-binding domain 13 90 IPR036390 -
Lal24g0411 186 Pfam linker histone H1 and H5 family 17 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal24g0411 186 PRINTS Histone H5 signature 3 24 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0411 186 PRINTS Histone H5 signature 30 47 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0411 186 PRINTS Histone H5 signature 109 123 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0411 186 PRINTS Histone H5 signature 170 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0411 186 MobiDBLite consensus disorder prediction 84 102 - -
Lal24g0411 186 PANTHER HISTONE H1 4 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0411 Lal-Chr24 2935161 2936107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0411 5 84 Single Myb Histone (SMH) Gene Family AT1G72740 38.750 2.36e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0411 K11275 - zju:107426309 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0411 24 2935161 2936107 Lal24g0411 24 2935161 2936107 ECH