Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0402 ATGTGTGGCGGTGCTATCATCTCTGACTTTATCCCTCGCCGCGTTAACCGCCGTATCACCGCCTCTGAGATCTGGCCTAACTCATTCGGCGCCAACCACAATGACTTCGACTTAGATTCCTCTTATCAACAGTCAACCACCGTCAAACGAACCCAACCTTCACCAGTTGTTAATGAACAAGTTGAGAAGCCTGTGAAGAGGCAAAGGAAGAACCTATATAGAGGAATTCGGCTACGTCCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCGAGAAAAGGGGTTCGTGTTTGGCTTGGAACATTCAATACTGCTGAAGAAGCTGCTAGAGCCTACGACAGAGAGGCTCGAAAAATCCGTGGCAAAAAAGCTAAGCTCAATTTTCCTAATGAGGATGATGAATATTCAATTCAACTTCCACCGATCCAACTCAAAAAGATTCCGTTGTTTCTGCAAGAACCACACCGTTGTGATAGTTTGAATAATGCCCCTATTAAAAATCTGAACTTGGAGTTCGGTTATGATCTGAACCAAGCTGGGGCAATTCCTTCTCATCATGTTACCGATCCTGTTATTATTTCAGGTGATGAAAATTCTGGGTCTGCAGGATCAGAGGGTATTTATTCGACAACGTTGAATGTGAAAGAGGTTTCAGAAGTGAAGGATGCAATGAACGAAGGTGAAGGGTTAAAGGATGAAGTTCTTAAGGTTACAGATGAGTTGATATCTTATGAGAACTGCATGAAGTTTTTTGAGATTCCTCACTATTTTGACCAATCAACTGAGCCAAATAATGTTCAGGGAAGTTTGGTTGAGGATCTTTGGAGCTTTGATTAA 837 0.4277 MCGGAIISDFIPRRVNRRITASEIWPNSFGANHNDFDLDSSYQQSTTVKRTQPSPVVNEQVEKPVKRQRKNLYRGIRLRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKLNFPNEDDEYSIQLPPIQLKKIPLFLQEPHRCDSLNNAPIKNLNLEFGYDLNQAGAIPSHHVTDPVIISGDENSGSAGSEGIYSTTLNVKEVSEVKDAMNEGEGLKDEVLKVTDELISYENCMKFFEIPHYFDQSTEPNNVQGSLVEDLWSFD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0402 278 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700|GO:0006355
Lal24g0402 278 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Lal24g0402 278 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Lal24g0402 278 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Lal24g0402 278 PANTHER EREBP TRANSCRIPTION FACTOR 30 152 - -
Lal24g0402 278 ProSiteProfiles AP2/ERF domain profile. 72 129 IPR001471 GO:0003700|GO:0006355
Lal24g0402 278 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Lal24g0402 278 CDD AP2 73 130 IPR001471 GO:0003700|GO:0006355
Lal24g0402 278 PANTHER DNA-BINDING DOMAIN 30 152 IPR044808 GO:0003700|GO:0009873
Lal24g0402 278 SMART rav1_2 72 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0402 Lal-Chr24 2870754 2872340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0402 1 130 AP2-EREBP Transcription Factor Family AT3G16770 57.353 4.19e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal24g0402 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0402 K09286 - gmx:100819416 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0402 24 2870754 2872340 Lal24g0402 24 2870754 2872340 ECH
Lal12g0500 12 3575445 3577647 Lal24g0402 24 2870754 2872340 LSH