Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal24g0402 | ATGTGTGGCGGTGCTATCATCTCTGACTTTATCCCTCGCCGCGTTAACCGCCGTATCACCGCCTCTGAGATCTGGCCTAACTCATTCGGCGCCAACCACAATGACTTCGACTTAGATTCCTCTTATCAACAGTCAACCACCGTCAAACGAACCCAACCTTCACCAGTTGTTAATGAACAAGTTGAGAAGCCTGTGAAGAGGCAAAGGAAGAACCTATATAGAGGAATTCGGCTACGTCCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCGAGAAAAGGGGTTCGTGTTTGGCTTGGAACATTCAATACTGCTGAAGAAGCTGCTAGAGCCTACGACAGAGAGGCTCGAAAAATCCGTGGCAAAAAAGCTAAGCTCAATTTTCCTAATGAGGATGATGAATATTCAATTCAACTTCCACCGATCCAACTCAAAAAGATTCCGTTGTTTCTGCAAGAACCACACCGTTGTGATAGTTTGAATAATGCCCCTATTAAAAATCTGAACTTGGAGTTCGGTTATGATCTGAACCAAGCTGGGGCAATTCCTTCTCATCATGTTACCGATCCTGTTATTATTTCAGGTGATGAAAATTCTGGGTCTGCAGGATCAGAGGGTATTTATTCGACAACGTTGAATGTGAAAGAGGTTTCAGAAGTGAAGGATGCAATGAACGAAGGTGAAGGGTTAAAGGATGAAGTTCTTAAGGTTACAGATGAGTTGATATCTTATGAGAACTGCATGAAGTTTTTTGAGATTCCTCACTATTTTGACCAATCAACTGAGCCAAATAATGTTCAGGGAAGTTTGGTTGAGGATCTTTGGAGCTTTGATTAA | 837 | 0.4277 | MCGGAIISDFIPRRVNRRITASEIWPNSFGANHNDFDLDSSYQQSTTVKRTQPSPVVNEQVEKPVKRQRKNLYRGIRLRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKLNFPNEDDEYSIQLPPIQLKKIPLFLQEPHRCDSLNNAPIKNLNLEFGYDLNQAGAIPSHHVTDPVIISGDENSGSAGSEGIYSTTLNVKEVSEVKDAMNEGEGLKDEVLKVTDELISYENCMKFFEIPHYFDQSTEPNNVQGSLVEDLWSFD | 278 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal24g0402 | 278 | Gene3D | AP2/ERF domain | 72 | 130 | IPR036955 | GO:0003700|GO:0006355 | |
Lal24g0402 | 278 | PRINTS | Ethylene responsive element binding protein signature | 73 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Lal24g0402 | 278 | PRINTS | Ethylene responsive element binding protein signature | 95 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Lal24g0402 | 278 | Pfam | AP2 domain | 73 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Lal24g0402 | 278 | PANTHER | EREBP TRANSCRIPTION FACTOR | 30 | 152 | - | - | |
Lal24g0402 | 278 | ProSiteProfiles | AP2/ERF domain profile. | 72 | 129 | IPR001471 | GO:0003700|GO:0006355 | |
Lal24g0402 | 278 | SUPERFAMILY | DNA-binding domain | 72 | 130 | IPR016177 | GO:0003677 | |
Lal24g0402 | 278 | CDD | AP2 | 73 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Lal24g0402 | 278 | PANTHER | DNA-BINDING DOMAIN | 30 | 152 | IPR044808 | GO:0003700|GO:0009873 | |
Lal24g0402 | 278 | SMART | rav1_2 | 72 | 135 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal24g0402 | Lal-Chr24 | 2870754 | 2872340 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal24g0402 | 1 | 130 | AP2-EREBP Transcription Factor Family | AT3G16770 | 57.353 | 4.19e-44 | 148 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Lal24g0402 | AP2 | 2.8e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal24g0402 | K09286 | - | gmx:100819416 | 338.961 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal24g0402 | 24 | 2870754 | 2872340 | Lal24g0402 | 24 | 2870754 | 2872340 | ECH | |
Lal12g0500 | 12 | 3575445 | 3577647 | Lal24g0402 | 24 | 2870754 | 2872340 | LSH |