Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0388 ATGTGGGTAGAGAGTAGAGAGAGTGCTAGGATGTTGGCCCTAAGATCAATTGGATGCGCCACAACCAAATTGAATAGATTTAAATGGCGGGAAATGGGGGAATTGTTGAGAATTGAGAAGAATGGAATGAGAAGAATGGGATCTGAAGCAGTTGTTGATGTTCCAGAATGGGCATCAAAACCTTGCATCATGGGTATCTATGAAGCCGGAAGAGGACCAATGGTTTATGGTTGTTTATACTGTGCTCGCTCCTACCAGAAGACCCTCGCCACTTTGAGTTTTGCAGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAAAATTATTTGGAGAATTGAAGGAAAATGATTCTATTGGATGGGCTTTTGATGTCATTGACCCAAGGGAACTCTCTGCTAAAATGCTTAAGAAGAATAAGATAAACTTGAATGAAATATCACATGACTCTGCCATGGGTCTCATTGATAGGGTACTGAAAATGGGAGTGCTTCTAACCGAGGTTTATATAGATACAGTTGGAGGTGCAGGGAAATATGAAGCTAAGCTGTCTAAGGTTTTTCCATCTATTAAATTTGTGATTGCAGAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGGGCAAGCATAGTTGCAAAGGTCACTAGAGACCGAGCTGTAAGAGAATGGGTGTTTGATGAGACTGCTGAAAACATTCTCAGGAACTTTGGCTCTGGATATCCTGCAGGAATTTTACTTACTATGTGA 744 0.4099 MWVESRESARMLALRSIGCATTKLNRFKWREMGELLRIEKNGMRRMGSEAVVDVPEWASKPCIMGIYEAGRGPMVYGCLYCARSYQKTLATLSFADSKTLKEEKREKLFGELKENDSIGWAFDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYIDTVGGAGKYEAKLSKVFPSIKFVIAEKADSLYPVVSGASIVAKVTRDRAVREWVFDETAENILRNFGSGYPAGILLTM 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0388 247 Pfam Ribonuclease HII 64 240 IPR024567 GO:0004523
Lal24g0388 247 PANTHER RIBONUCLEASE 49 241 - -
Lal24g0388 247 Coils Coil 247 247 - -
Lal24g0388 247 SUPERFAMILY Ribonuclease H-like 62 242 IPR012337 -
Lal24g0388 247 CDD RNase_HII_eukaryota_like 64 241 - -
Lal24g0388 247 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 61 247 IPR024567 GO:0004523
Lal24g0388 247 PANTHER RIBONUCLEASE H2 SUBUNIT A 49 241 IPR001352 GO:0003723|GO:0004523
Lal24g0388 247 Gene3D - 34 230 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0388 Lal-Chr24 2803459 2810133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0388 54 241 Core DNA Replication Machinery Family AT2G25100 64.583 8.53e-83 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0388 K10743 - gmx:100779875 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0388 24 2803459 2810133 Lal24g0388 24 2803459 2810133 ECH
Lal13g0479 13 3104369 3110166 Lal24g0388 24 2803459 2810133 LSH