Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0385 ATGTTTCAGGGTTCCACCACGATGCCAACAAGGTGGCCGTCTCAGCCGAGTCGATGGACTCACAACCAGGACAAGCTATTCGAGCGAGCTCTGTTGGTCGTGCCGGAGGACGCGCTGGACCGGTGGGATAAAATTGCCGAGCAGGTTCCCGGTAAGTCGGCGGCGGAGGTGAAGGTGCACTATGATGATTTGGTTCATGATTTGTTTGAAATTGAATCAGGTCGGGTTTCGGTGCCGGAGTACACGGATGAATCGGCGGTGGCGGCTGGTGGAAGTGGAAGGTTATCGTCGTGGGACTCTTCTAATCAGATATCATTTGGGTCAAAACCTAAACATGGTGACAACGAGAAGAAGAAGGGAACTCCATGGACAGAAGAGGAACACAGGCTATTTCTCGTGGGGCTAAGTAAATTTGGCAAGGGAGATTGGAGAAGCATTTCGAGAAATGTCGTTGTGACAAGAACACCAACTCAAGTTGCTAGCCATGCCCAAAAATACTTCATTCGTCAAACTTCAGGTAAGAAAGAGAGGAAAAGAACAAGCATCCATGACATAACCACCGTAGACAGTAACTCTGTGTCTGCACCAATGGATCAGAATTGGGTTCCTCCTCCGGGTGGTCCAATGCAGCAGTCACAAGAAATGCAGTTTAACCCAATGAACAATTTGCATGATCAAAGGGGTGGGTGTGGGTATTCAAATTATGGCTTTTGA 714 0.486 MFQGSTTMPTRWPSQPSRWTHNQDKLFERALLVVPEDALDRWDKIAEQVPGKSAAEVKVHYDDLVHDLFEIESGRVSVPEYTDESAVAAGGSGRLSSWDSSNQISFGSKPKHGDNEKKKGTPWTEEEHRLFLVGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFIRQTSGKKERKRTSIHDITTVDSNSVSAPMDQNWVPPPGGPMQQSQEMQFNPMNNLHDQRGGCGYSNYGF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0385 237 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Lal24g0385 237 MobiDBLite consensus disorder prediction 94 109 - -
Lal24g0385 237 MobiDBLite consensus disorder prediction 90 122 - -
Lal24g0385 237 Gene3D - 121 172 - -
Lal24g0385 237 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Lal24g0385 237 SMART sant 119 169 IPR001005 -
Lal24g0385 237 SMART sant 15 67 IPR001005 -
Lal24g0385 237 CDD SANT 122 167 IPR001005 -
Lal24g0385 237 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 14 237 - -
Lal24g0385 237 ProSiteProfiles SANT domain profile. 118 171 IPR017884 -
Lal24g0385 237 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 237 IPR043363 -
Lal24g0385 237 SUPERFAMILY Homeodomain-like 117 171 IPR009057 -
Lal24g0385 237 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677
Lal24g0385 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 171 IPR017930 -
Lal24g0385 237 SUPERFAMILY Homeodomain-like 13 65 IPR009057 -
Lal24g0385 237 CDD SANT 18 61 IPR001005 -
Lal24g0385 237 Gene3D - 13 78 - -
Lal24g0385 237 ProSiteProfiles Myb-like domain profile. 17 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0385 Lal-Chr24 2791822 2794547 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g0385 Myb_DNA-binding 8.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0385 - - gmx:547481 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0478 12 3437075 3439368 Lal24g0385 24 2791822 2794547 LSH
Lal13g0474 13 3079528 3081754 Lal24g0385 24 2791822 2794547 LSH