Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0380 ATGGTGCTTTTTCCTATGTGCTGCATTCTTTTAATGTTCTTCATGCTCCTGAGTTGTTTTTCACTTTCAATTAAAGCTTCATTCAATCTTACTTTGCCACACCAACATCCTCACCCTCAAATTGTAGTTGATGAACTTCAATGGAAAGTCAATGCATCACTATCCAGAAGAGAACTCCACGACCAAGCTTGCCTAACGGGAAACCCAATTGATGACTGCTGGCGATGTGACCCAAACTGGGCTGCAAATCGCCAACGTCTCGCCGATTGCGGAGTCGGCTTTGGCCGCGACGCATTAGGCGGAAAAGGTGGCCAAATTTACATAGTAACAGACTCAACAGACTCTGACCCATCCAACCCCACCCCAGGCACGCTTCGCCACGCTGTAATCCAAGACGTTCCGTTATGGATCGTGTTCTCGGACGACATGACAATCAATCTCAAACACGAACTCATCTTCAACAGCTACAAAACCGTTGATGGCCGTGGCGCGAACGTGCACGTGACCGGCAACGGTTGCATAACCCTACAACACATCACAAACGTTATTATCCACAACATACACGTGCATGATTGCAAACCTTCAGGGAACACTAAAATACGGTCAAGTCCAACACAAGTTGTGGCTCGTGGTGAATCAGACGGTGATGGCATAACAATTTCTAGTGGTCAGAAGATATGGATCGATCATTGCTCACTGTATTCTTGTACAGATGGTTTAATAGATGTGATAAAGGGTTCGACAGGGATAACAGTTTCTAATAGCTACTTTGCAAAACACGATAAGGTGATGCTGTTAGGGCATGATGATGGGTACATGGATGATAAGGGAATGCAGGTAACTGTTGCATTCAACCATTTCGGAAAAGGTTTGGTTCAAAGAATGCCGAGGGGTAGGCATGGATATATACACGTCGTGAATAATGATTACACTAAGTGGGAAATGTATGCTATTGGTGGTAGTGCTGCTCCAACCTTTAACAGCCAGGGTAACCGTTACACTGCTCCCTCCGATCCTAATTCCAAAGAGGTGACAAAGCGAGTGGACACAAAAGAGAGTGTGTGGAGTGAATGGAATTGGAAGACAGAGGGAGACATAATGGTAAATGGAGCATTTTTTGTCCCTTCAGGTTCAGGGTCGAGTGATCAGTACGCAAAAGCCACTAGTCAACAAGCTAAATCCGCTTCTCAAATTGATCAACTCACCATGTATTCAGGTGTCTTCGGTGATCTCAGGGACAATGGAGATTCAAATCCCGGGTCCAATGGAGGTGAGACCGTGACTGGATCGACCAATGGCAATGATGCGACTGGGTCTGGCAGCGGTGAGGATTGGAACTTTCGGATGAAATACGGAGGTGGTAGTAGCCAAGCAACACCACCATCACCCACCTCATTAATTTTATTTGTTTCAACTTTCTATCTTTTAATTATTTTAATTTTGGACACTAGGACCAACCATGTTATTCTATTATCATTACTATGGCCATAG 1491 0.4487 MVLFPMCCILLMFFMLLSCFSLSIKASFNLTLPHQHPHPQIVVDELQWKVNASLSRRELHDQACLTGNPIDDCWRCDPNWAANRQRLADCGVGFGRDALGGKGGQIYIVTDSTDSDPSNPTPGTLRHAVIQDVPLWIVFSDDMTINLKHELIFNSYKTVDGRGANVHVTGNGCITLQHITNVIIHNIHVHDCKPSGNTKIRSSPTQVVARGESDGDGITISSGQKIWIDHCSLYSCTDGLIDVIKGSTGITVSNSYFAKHDKVMLLGHDDGYMDDKGMQVTVAFNHFGKGLVQRMPRGRHGYIHVVNNDYTKWEMYAIGGSAAPTFNSQGNRYTAPSDPNSKEVTKRVDTKESVWSEWNWKTEGDIMVNGAFFVPSGSGSSDQYAKATSQQAKSASQIDQLTMYSGVFGDLRDNGDSNPGSNGGETVTGSTNGNDATGSGSGEDWNFRMKYGGGSSQATPPSPTSLILFVSTFYLLIILILDTRTNHVILLSLLWP 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0380 496 Pfam Pectate lyase 149 319 IPR002022 -
Lal24g0380 496 MobiDBLite consensus disorder prediction 412 444 - -
Lal24g0380 496 SUPERFAMILY Pectin lyase-like 49 385 IPR011050 -
Lal24g0380 496 Gene3D - 67 409 IPR012334 -
Lal24g0380 496 PANTHER PECTATE LYASE 18-RELATED 6 428 IPR045032 GO:0030570
Lal24g0380 496 PRINTS Pollen allergen Amb family signature 90 107 IPR018082 -
Lal24g0380 496 PRINTS Pollen allergen Amb family signature 114 139 IPR018082 -
Lal24g0380 496 PRINTS Pollen allergen Amb family signature 150 166 IPR018082 -
Lal24g0380 496 PRINTS Pollen allergen Amb family signature 214 235 IPR018082 -
Lal24g0380 496 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Lal24g0380 496 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Lal24g0380 496 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
Lal24g0380 496 PRINTS Pollen allergen Amb family signature 387 410 IPR018082 -
Lal24g0380 496 MobiDBLite consensus disorder prediction 415 441 - -
Lal24g0380 496 PANTHER PECTATE LYASE 6 428 - -
Lal24g0380 496 SMART amb_all 142 339 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0380 Lal-Chr24 2743766 2746805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0380 23 414 Polysaccharide Lyase AT3G54920 62.408 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0380 K01728 - gmx:100808438 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0474 12 3394264 3399096 Lal24g0380 24 2743766 2746805 LSH
Lal13g0472 13 3050400 3053564 Lal24g0380 24 2743766 2746805 LSH