Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0373 ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACTCACTTCGAAATTGAAGTCAAGCCCGAAGACACGATTTCTGAAGTGAAGAAAAATATAGAAAATGTTCAGGGTGCAGATGTTTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGCTACAACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCCAAGAGTAAGACTACATCTGGTGAAGGATCTGCTACTTCAACTACACCCTCAGTAAAGACCCCACAAACAAGTGCGGCTCCTACTTCAACCCCCCCAGTGTCAGTAGCATCTCAAGCTCCTGCTGCAACTCTTGCATCACCTGCATCTCTTCCAGCTCCAGCTCCAGCTCCAGCTCCAACTCCTACTCCTGCTCCTACACCTGCTTCTATAGCTTCGAGCACTTCCGTGGAAGGGTCTGATGTCTATGGGCAGGCAGCGTCAAATCTGGTTGCTGGAACCAACTTGGAGGAAATTATTCAGCAAATCCTTGATATGGGTGGTGGGAGCTGGAACAGGGATACTGTTGTCCGTGCTCTCCGAGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATATCTGTATTCAGGTATCCCTGAGCAAGCTGAAGCACCCATTGTGGCCCGAGTGCCTGCAAGTGAACAACCTGCTAATCCTACAGCTGCTGCTTCACAAGCAGCACAACCAGCTCCTGTTACGTCAGGAATACCTAATGCTCTACCTTTAGACCTATTTCCCCAGGGCCTTCCCAATGTTAGTTCTGGTGCTGCTAGTGCTGGCTCTTTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATTTTACAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGACTTCCTCCGCCTTGTAAATGAACCTGTGGAAGGTGGTGAAGGGAATTTATTGGGGCAGCTGGGTGCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAGGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGGGCAACCGTGTTGGAGGTTTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAACAATAG 1209 0.4673 MKVFVKTLKGTHFEIEVKPEDTISEVKKNIENVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKTTSGEGSATSTTPSVKTPQTSAAPTSTPPVSVASQAPAATLASPASLPAPAPAPAPTPTPAPTPASIASSTSVEGSDVYGQAASNLVAGTNLEEIIQQILDMGGGSWNRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPIVARVPASEQPANPTAAASQAAQPAPVTSGIPNALPLDLFPQGLPNVSSGAASAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLVNEPVEGGEGNLLGQLGAGMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDEQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0373 402 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lal24g0373 402 MobiDBLite consensus disorder prediction 231 246 - -
Lal24g0373 402 Gene3D - 266 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal24g0373 402 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lal24g0373 402 MobiDBLite consensus disorder prediction 80 119 - -
Lal24g0373 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 168 211 IPR015940 -
Lal24g0373 402 SUPERFAMILY XPC-binding domain 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal24g0373 402 SMART ubq_7 1 75 IPR000626 GO:0005515
Lal24g0373 402 SUPERFAMILY UBA-like 168 219 IPR009060 GO:0005515
Lal24g0373 402 SMART CBM 274 317 IPR006636 -
Lal24g0373 402 MobiDBLite consensus disorder prediction 226 246 - -
Lal24g0373 402 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lal24g0373 402 MobiDBLite consensus disorder prediction 80 152 - -
Lal24g0373 402 Pfam UBA/TS-N domain 170 208 IPR015940 -
Lal24g0373 402 Pfam UBA/TS-N domain 357 392 IPR015940 -
Lal24g0373 402 SMART uba_6 170 210 IPR015940 -
Lal24g0373 402 SMART uba_6 357 394 IPR015940 -
Lal24g0373 402 Gene3D - 1 77 - -
Lal24g0373 402 TIGRFAM rad23: UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Lal24g0373 402 Gene3D - 163 213 - -
Lal24g0373 402 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 401 - -
Lal24g0373 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Lal24g0373 402 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 401 - -
Lal24g0373 402 Gene3D - 349 396 - -
Lal24g0373 402 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Lal24g0373 402 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Lal24g0373 402 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Lal24g0373 402 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Lal24g0373 402 SUPERFAMILY UBA-like 339 400 IPR009060 GO:0005515
Lal24g0373 402 CDD UBA1_Rad23_plant 164 213 - -
Lal24g0373 402 CDD Ubl_Rad23 1 74 - -
Lal24g0373 402 MobiDBLite consensus disorder prediction 125 141 - -
Lal24g0373 402 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0373 Lal-Chr24 2706654 2710868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0373 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 5.24e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0373 K10839 - gmx:100814162 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0462 13 2979890 2983707 Lal24g0373 24 2706654 2710868 LSH