Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0371 ATGGGGCCTGTGTTTGATGCTGCGTTGAAGAAGCTCTGGATTTGTTATTCCTTGTTGTTGAATCTTACTTTGTGCTCGGTTTCCTCCTACTCTCACAGGCAGAGTCTTAATCTTCTTAACCCAACTGTTTCAATGTGTTTGAGACCAAAAAGGGTTTTCAACTTTAATTGTTCCACCATGTCTAAGCCTCGAAAACAACCCGCAAATAGACTGAAACAAAGGACTCAAACCTTTCAAGAGCCCAAGATTATGAGAAAATTAAGGATAATTTTCAACGACCCTGATGCTACTGATTCATCTGATGATGAATTTGAGCCTAGAAAAACCAAAAGATGCATTCGTGAGGTACCACTTCCCCTTGTTTCAGCCACCGACTCTACTAACACCACATTTACTGAAACAACAATCTACTGTGATGAAAGAAACAAGACTTGCATTGAAGGTAAACAACAACCCGAAGTAAATAAAAGGAAGAGGTGTTTTAAGCAAAACCCTTCAACTAAGATAGTACCTTTTGGCAAATATAGGGGAGTGAGGCAAAGAAAATGGGGTAAATGGGCTGCTGAGATCCGTGACCCGTTTAAAAGTACCCGTCTCTGGCTAGGTACTTACAATACTGCTGAAGAGGCTTCACAAGCCTATGAGAACAAAAGGCTTGAATTTGAAGCTATGGCAAAGGCTCAATCTTGCAACAATGGCTGTTATTCTTCTGCTTCTTCTGTTGTAATACCTATGACTACAACTACTACTGCTACATATAAGAGTAATAACTACACTGCAGTGCAATCTGTATCAGAGAAATTTTCTAGTTCTACTACTTTGGAAGATTCTGAGAGCATGTTGTCACACACATCACCATCTTCTGTGCTTGACTTGGATACTTCAGCTTCTAATTTGATTGGCAAGGGTAATGATGTTTCATGCAATGAAGCTGTTGAGGCTTGTGATTTTGTGGCTGAGTTAGCTGAACTAGAGATACCAGATTTGAGCACTTTGAACTTGCCTCCTCTTACACCATTTAATGCTGCTGATACTGGTGCTGCTTCTGTGGCTGAGCCAAACCATGCTCTTGATTTTGATTTGTTACCATTCGATTATTATGCCAATGGCTTTGATAATCTTGGTGGCTTAGAGGATATCCATATCTTTGGATTTAATGATAAAGAGCCTAGTGAGCTTCCTGATTTTGATTTTGTTGATTTCGGTGCTGATGATTTTGCTGGTTGGATTGAAGATCCCTTCATTGTAAAGTTCGCCTAA 1260 0.3992 MGPVFDAALKKLWICYSLLLNLTLCSVSSYSHRQSLNLLNPTVSMCLRPKRVFNFNCSTMSKPRKQPANRLKQRTQTFQEPKIMRKLRIIFNDPDATDSSDDEFEPRKTKRCIREVPLPLVSATDSTNTTFTETTIYCDERNKTCIEGKQQPEVNKRKRCFKQNPSTKIVPFGKYRGVRQRKWGKWAAEIRDPFKSTRLWLGTYNTAEEASQAYENKRLEFEAMAKAQSCNNGCYSSASSVVIPMTTTTTATYKSNNYTAVQSVSEKFSSSTTLEDSESMLSHTSPSSVLDLDTSASNLIGKGNDVSCNEAVEACDFVAELAELEIPDLSTLNLPPLTPFNAADTGAASVAEPNHALDFDLLPFDYYANGFDNLGGLEDIHIFGFNDKEPSELPDFDFVDFGADDFAGWIEDPFIVKFA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0371 419 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Lal24g0371 419 PRINTS Ethylene responsive element binding protein signature 197 213 IPR001471 GO:0003700|GO:0006355
Lal24g0371 419 ProSiteProfiles AP2/ERF domain profile. 174 233 IPR001471 GO:0003700|GO:0006355
Lal24g0371 419 Gene3D AP2/ERF domain 174 229 IPR036955 GO:0003700|GO:0006355
Lal24g0371 419 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 69 397 - -
Lal24g0371 419 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 69 397 - -
Lal24g0371 419 SUPERFAMILY DNA-binding domain 174 221 IPR016177 GO:0003677
Lal24g0371 419 CDD AP2 174 214 IPR001471 GO:0003700|GO:0006355
Lal24g0371 419 SMART rav1_2 174 228 IPR001471 GO:0003700|GO:0006355
Lal24g0371 419 Pfam AP2 domain 174 223 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0371 Lal-Chr24 2685289 2687084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0371 79 400 AP2-EREBP Transcription Factor Family AT1G68550 33.634 2.07e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal24g0371 AP2 5.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0371 - - lang:109336607 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0462 12 3300756 3301835 Lal24g0371 24 2685289 2687084 LSH