Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0369 ATGAGTTCTACAACTACTAAGAATGTGTCGAACCCGGTTAGTGGGAAAACCGCACGAGTTTGTGATAACTGCATAACAAAGAGGGCACGTTGGTATTGTGCTGCAGATGATGCTTTTTTGTGTCAAGCTTGTGACTCTTCTGTTCACTCAGCTAATCCATTGGCTCGGAGACATGAAAGACTCCGTTTGAAAACGGCGTCATTCAAATCCTCCAAAGAACTCAATACCTATGCTCCTCCTTCTTGGCACCACAAGAAAGCTCGAACACCAAGACATGGGAATCAACACTCTAAGAACTCGAGTAAAAACAATAACAGCTCATTTCATCTCGTTCCTGAAGTTGGATCTGATGAGGTGAATTACAATGATGAGAATGAGGAGCAGCTACTTTTTAGGGTTCCTATATTTGAACCCTTATGCAGTACTCCTTCTTCTATCACTTCACATGAAAGTGTTGAAAAAAGCAAGGTTTCATGGGATTATAATGTTAATTACCATGAAGGGGTGGAAAGCTTGCATGGTGGTTTTGTTCCATCTGAGAATGAACTCTATGAGTTTGCTGCTGATGTTGAAAGCTTGTTAGGTAGGGGACTAGAAAATGAGTGTATAGGGATGGAAGAGTTGGGGCTGGTTGATATAAAAGAAGAGTCGTGGGAGTGTTCTGTGGGTAGTGGCGAAAAGAAGGTGATGTTTGACGGTGAAGCGAGTCATGAAATGGAAGATAAGATGGTGTTGAAAGATATGGAAAGAGAATCTTTTGAATTGAGCTATGATTATGGTTGTCATGTAATGATGAGGGAGAAGGTAGATTTGGATGTGGAGGATGGTGGAGAAGTGAAAGAAAATGACGAGGGAAAGAGAAAGAAGATATTATTGCAGCTAGATTATGAAGGAGTAATCAGTGCCTGGGATAGCCAAAAGTGTCCTTGGACTACTGGTGATAAACCAAATTTGGATCCTGATGAGTGCTGGCCTCACTGCATGGGAACTTGTGGAAAGGAGCTTCATTATTCTCATGGTGGATTTGGGTGCCATCCAGTTGTGGCAGACGGTGGTAGAGAGGCAAGAGTATCAAGGTACAGAGAAAAGCGCCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGAAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGTAGGTTTGTGAAGAGGACTTCCTTTGTAGCACCGACATTTCCATTGCTCAATAAATAA 1227 0.4214 MSSTTTKNVSNPVSGKTARVCDNCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERLRLKTASFKSSKELNTYAPPSWHHKKARTPRHGNQHSKNSSKNNNSSFHLVPEVGSDEVNYNDENEEQLLFRVPIFEPLCSTPSSITSHESVEKSKVSWDYNVNYHEGVESLHGGFVPSENELYEFAADVESLLGRGLENECIGMEELGLVDIKEESWECSVGSGEKKVMFDGEASHEMEDKMVLKDMERESFELSYDYGCHVMMREKVDLDVEDGGEVKENDEGKRKKILLQLDYEGVISAWDSQKCPWTTGDKPNLDPDECWPHCMGTCGKELHYSHGGFGCHPVVADGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFVAPTFPLLNK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0369 408 CDD Bbox1_BBX-like 20 63 - -
Lal24g0369 408 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Lal24g0369 408 Pfam CCT motif 353 395 IPR010402 GO:0005515
Lal24g0369 408 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Lal24g0369 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 4 401 - -
Lal24g0369 408 SMART bboxneu5 16 63 IPR000315 GO:0008270
Lal24g0369 408 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 401 - -
Lal24g0369 408 MobiDBLite consensus disorder prediction 74 109 - -
Lal24g0369 408 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0369 Lal-Chr24 2657120 2658961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0369 7 395 C2C2-CO-like Transcription Factor Family AT1G25440 48.537 7.14e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal24g0369 CCT 9.7e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0369 - - vun:114190512 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0457 13 2925921 2927699 Lal24g0369 24 2657120 2658961 LSH