Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0364 ATGTTTCATAAGTTCTCAAGCAAACCAGATGAAGCTAGGAGACCAGAATGGAACCCATTAGACCTTAACAATTTGCCTGATGAATACTCTAGAGATGGCAAACAAGTCCTCGAAGAAAGCTCCTCACCAAGTTATAGGAAAAAGAAAAATGGCGGGAGAGAAGGAAAAGAGGAGTGTGGGAAAGTGTATGAATGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACAGAGACGCTGAACCATGCTCGTCAACTAGTCTTCCGCACCGATCACACCCTTTCTTCACAAGCTGCTCCTCACCTAGGATGCTGTCAACCAATAGGAGCAGGTGGTGCAGGAGGTTATCACCCATCAGGCAACATGGGAGACCCAACAATACCACCACCTCTCAGATTCCCAAGATACTTCTCTGCTTCATCATCCTCATCCCACATTCCACCACCACCTCCACCACAACCACCATATCTCTACGCTTCACCTTCACGGCCACCAGTGCCTTTTACCTCACACTTCCCTCCTCATAACGATTACTATGTTGGTCATGTCCTGAACCCCAGCCACCACAGCTATATCAATGTGGCAGGTTCAGGAGGAGGTGAGTCTGGTGGTAGTTACACTTGCATTGGTGCACCTGTGGGGCAAGCGTTCGGCGCTGGTGGTAAGGACGGGACAGTGCAGAATCAGGAGGAAGGGTTGAATTGGGGAAGGAGCTATTCAGGCGGTGCTGATGCTTCAGCTATCAATCGGTTTCATGATGTTAGAGTGAATGACAGTGTTGTTGGTGTGTAT 834 0.4904 MFHKFSSKPDEARRPEWNPLDLNNLPDEYSRDGKQVLEESSSPSYRKKKNGGREGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRTDHTLSSQAAPHLGCCQPIGAGGAGGYHPSGNMGDPTIPPPLRFPRYFSASSSSSHIPPPPPPQPPYLYASPSRPPVPFTSHFPPHNDYYVGHVLNPSHHSYINVAGSGGGESGGSYTCIGAPVGQAFGAGGKDGTVQNQEEGLNWGRSYSGGADASAINRFHDVRVNDSVVGVY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0364 278 MobiDBLite consensus disorder prediction 1 56 - -
Lal24g0364 278 MobiDBLite consensus disorder prediction 27 56 - -
Lal24g0364 278 PANTHER ZINC FINGER PROTEIN JAGGED 14 239 IPR045320 GO:0003700
Lal24g0364 278 PANTHER ZINC FINGER PROTEIN JAGGED 14 239 IPR031113 GO:0007275
Lal24g0364 278 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lal24g0364 278 MobiDBLite consensus disorder prediction 1 17 - -
Lal24g0364 278 SUPERFAMILY beta-beta-alpha zinc fingers 61 91 IPR036236 -
Lal24g0364 278 Gene3D Classic Zinc Finger 40 115 - -
Lal24g0364 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0364 Lal-Chr24 2616836 2619137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0364 12 228 C2H2 Transcription Factor Family AT1G13400 44.037 1.27e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0364 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0364 - - aprc:113871902 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0450 13 2879212 2883147 Lal24g0364 24 2616836 2619137 LSH