Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0356 ATGGGTTCGAAGATAGAAGGACCATCTACGCCAGCAAATCGACGTGATCCTTATGAGGTTTTATCTGTCACAAGAGACGCTACTGATCAAGAAATCAAAACCGCTTACAGAAAGCTAGCTCTCAAGTATCACCCTGACAAGAATGCCAGCAATCCTGAAGCTTCAGAACTATTTAAGGAGGTTGCATATTCTTATAGTATCTTGTCTGATCCAGAGAAGAGAAGGCAGTATAACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGATGTGGAAATTGACTTATCTAATCTTGGGACTGTCAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTTCCCATCAAGACTACTATTTCAGCTAATGTACTTGAAGAAGCTCTGAATGGCACTGTTACAGTCAGACCCCTTCCGATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAGTGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCAGAGTCAGGGATTGTAATAAGAGCTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACATGATGCAAATGGTGGCTATGGTTTAGCGTTACAGGAAGATAGCGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGAATTCAACTGTAAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCAGAACTAAAGCCTGGCACTCATATCTTTGCTGTTTATGGGGATAACTTCTTTAAGACTGCTAGCTATACAATTGAGGCAGTATGTGCACAATCACATGAAGATACCAGCCAAAAGCTTATGGACATTGAGGCTCAAATTTTAAGAAAGAGGAATGAACTGCACCAATTTGAAGCAGAGTATAGAAAGGCAGTGGCACGCTATCAGGAAGTGACAGATAGATACGCAATAGAAAAACAGTCTGTAGATGAGCTTCTGAAACAAAGGGACAGTATCCATTCTTCCTTCACCATTGTCAAATCAAGCAATATTAGTGGGAGTGCTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGAAAGCCCTGAGGATGGAGGGTCAAATGGAAAGGAGAAATCAGGCAAAAAGAAATGGTTTAACCTCAATCTTAAGGGTTCCTGA 1209 0.4103 MGSKIEGPSTPANRRDPYEVLSVTRDATDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYNSAGFEALDADSMDVEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVIRATSTAQSKFKLLYFEHDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMNSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAQSHEDTSQKLMDIEAQILRKRNELHQFEAEYRKAVARYQEVTDRYAIEKQSVDELLKQRDSIHSSFTIVKSSNISGSASNLSNGSSSKISGEESPEDGGSNGKEKSGKKKWFNLNLKGS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0356 402 PANTHER BNAA02G13770D PROTEIN 3 402 - -
Lal24g0356 402 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 3 402 - -
Lal24g0356 402 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Lal24g0356 402 CDD DnaJ 16 70 IPR001623 -
Lal24g0356 402 MobiDBLite consensus disorder prediction 359 402 - -
Lal24g0356 402 Pfam DnaJ domain 16 78 IPR001623 -
Lal24g0356 402 SMART dnaj_3 15 73 IPR001623 -
Lal24g0356 402 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Lal24g0356 402 PRINTS DnaJ domain signature 18 36 IPR001623 -
Lal24g0356 402 PRINTS DnaJ domain signature 36 51 IPR001623 -
Lal24g0356 402 PRINTS DnaJ domain signature 53 73 IPR001623 -
Lal24g0356 402 PRINTS DnaJ domain signature 73 92 IPR001623 -
Lal24g0356 402 Gene3D DnaJ domain 3 97 IPR036869 -
Lal24g0356 402 SUPERFAMILY Chaperone J-domain 12 85 IPR036869 -
Lal24g0356 402 Coils Coil 286 327 - -
Lal24g0356 402 MobiDBLite consensus disorder prediction 380 394 - -
Lal24g0356 402 MobiDBLite consensus disorder prediction 359 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0356 Lal-Chr24 2522666 2528353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0356 9 88 C2H2 Transcription Factor Family AT1G74250 38.824 7.37e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0356 - - lang:109336585 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0448 12 3154364 3161015 Lal24g0356 24 2522666 2528353 LSH
Lal13g0441 13 2788306 2794532 Lal24g0356 24 2522666 2528353 LSH