LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal24g0349	ATGGAGGCGCAACAACTTCCAACCCCATCCACGGTGGCTCCTCCTCAATCCACGGTGGCTCCTCCACCAACACATCCAACCCACCTCAATTACCCTGACTCCGTCGACTCTTCCCCACGCTCCCGAAACACTGACTCATGGGACGAGCCTTTTCCACCTGCCTCCACCAAGCTCCGCCTCATGTGCAGCTACGGCGGCCACATCGTTCCCCGTCCTCATGATAAGTCTCTCTGTTATGTCGGTGGCGACACGCGCATCGTTGTTGTGGAGCGTAATACCTCACTCTCTGACCTCTCCACGCGCCTCTCTAGAACCTTCCTTGACGGAAGATCCTTCACTCTGAAATATCAACTCCCAAACGAAGACTTAGATTCTTTAATCTCTGTTACCACTGATGAAGATTTAGATAACATGATCGATGAATATGATCGAACCAATTCAAATTCATCTATCAAACCCTCGCGAATTCGGTTATTCCTCTTTCCGATTAAACCTGATTCGTCTCAGTCTATTCCTCCGATTCTCGATAGTTCTGCGAAATCGGATGATTGGTTTCTCAACGCGCTAAATAGTGCTGGATTACTCAACCGAGGGTTTTCTGATTCTGCTTCTGTTGATTCCCTTCTCCGTTTGGATGATGCTGTGGTAGGGAATAATCTAGAAGGTTCTAAGGAGGGTGGTGTTGCAGTTGAAGGTTCTATTTTACAGACTGGATCTTTTGCGAATTCTAAGAATTTGAATTCGAATTCTAAACAGGATGTTCATTCTGTTCCTGATTCGCCTATGTTGGAAAACTCTTCGAGTTTTGGCTCTACTTCTTCGTCTCCTTCGCTGGCGAATTTGCCTCCAATTAGGGTTCATGTGGAGGATGGAAACGGTGGTGGTGGTAAGGTTAAGGTATTGCAGCATGATCAGAAGGTGATGGGGATTGAGGAACAATTTGCTCAAATGGGTGTTGGTGTGGGTCAGAAGCAAGAGGAGGGTTTTGCTGTTATGTCTTCGCCACCGCCACCTCCGGTACCGACTACCCTTTCTGCCGCGGCTGTAAGTGCGCCGATCGGGTCTGCAGTGGTGCCCGGTGATTACCCGAATCGGGTTATCTCCGATGATCAGAGATCAGATCAAGGTGTGCCTGTGGGATACAGAAAACCACCAACTTCTCAGCAACAGACACAGACTCAAGTGTTGTTGCCTTCTCAATTTCAACAGAAGTCAACTGGTGCTGTTGATTTGCCTTCCCCAGATTCAGTTTCAAGTGATAGTAGTTTTCAAAATGCAATGTCACGTCAAAAGCCAGTGAACTATCAAGAACAAGTTCAGACTCAATCTGGAACAAGGGTTCTTAGTAGCCCTGTTGATCCAAAACTTAATGTGTCTGACACACACGGTCTGATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTATTGCAACAGCAATTTGATCATTATCAGCAGCAGCAACAGCAACATCAGCAGCTGCAACATCATCATCAGCAGCCTCAGCAGCAACAACAGCAGCCGCAGTTTATACCTGGGACACACTTCATTCACCATACCCCTGCTGGGGCCATGCCAATTTCAGCATACTATCCTGTATATCCTTCCCAGCAACAGTCTCATCCTCATCCCCAGGTTTACTATGTGCCTGCAAGACAGCCTCAGGCTTACAATTTGTCTACGCAACAGGCTAATATTGGTGATTCTCCCACAGCCATCCAGCCCCAGAATCAGCCAAATCCTGCTATGTCGCCTCCACCTTCTGCAGCTTACAACCCCATTAGAAATGCTCCTCTGCCTAAAACTGAAATGACGGCAGCTGCCTACAGAACTACAGCTACAGGCGCCCCTCAATTAGTTCATGTTCCTGCTAATCAGCATCAGCAACAATATGTTGCTTACTCACAAATTCACCATCCTTCTCAGTCCATTGCCCCTAATTCTGCTGCCCCTCCTAATTATGCTTATGAGTATGCGGATCCTGCTCATGCTCAGATATACTACTCTCAACCTCTGCCCCCCACAATGCCTTCACAATACCAGACCATGACCGCCGCTGCTGTTGCAATGCCAGAAGTTTCTGCCCAGCATCTGTCGGACAGCATGAAGCAACAACAGATAAGAACCTCACAGCCATTATAA	2145	0.4774	MEAQQLPTPSTVAPPQSTVAPPPTHPTHLNYPDSVDSSPRSRNTDSWDEPFPPASTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERNTSLSDLSTRLSRTFLDGRSFTLKYQLPNEDLDSLISVTTDEDLDNMIDEYDRTNSNSSIKPSRIRLFLFPIKPDSSQSIPPILDSSAKSDDWFLNALNSAGLLNRGFSDSASVDSLLRLDDAVVGNNLEGSKEGGVAVEGSILQTGSFANSKNLNSNSKQDVHSVPDSPMLENSSSFGSTSSSPSLANLPPIRVHVEDGNGGGGKVKVLQHDQKVMGIEEQFAQMGVGVGQKQEEGFAVMSSPPPPPVPTTLSAAAVSAPIGSAVVPGDYPNRVISDDQRSDQGVPVGYRKPPTSQQQTQTQVLLPSQFQQKSTGAVDLPSPDSVSSDSSFQNAMSRQKPVNYQEQVQTQSGTRVLSSPVDPKLNVSDTHGLIQMQQHVQDPGYLLQQQFDHYQQQQQQHQQLQHHHQQPQQQQQQPQFIPGTHFIHHTPAGAMPISAYYPVYPSQQQSHPHPQVYYVPARQPQAYNLSTQQANIGDSPTAIQPQNQPNPAMSPPPSAAYNPIRNAPLPKTEMTAAAYRTTATGAPQLVHVPANQHQQQYVAYSQIHHPSQSIAPNSAAPPNYAYEYADPAHAQIYYSQPLPPTMPSQYQTMTAAAVAMPEVSAQHLSDSMKQQQIRTSQPL	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal24g0349	714	ProSiteProfiles	PB1 domain profile.	57	163	IPR000270	GO:0005515
	Lal24g0349	714	Gene3D	-	77	161	-	-
	Lal24g0349	714	SMART	PB1_new	72	163	IPR000270	GO:0005515
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	570	590	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	358	455	-	-
	Lal24g0349	714	PANTHER	EXPRESSED PROTEIN	22	704	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	484	509	-	-
	Lal24g0349	714	SUPERFAMILY	CAD & PB1 domains	73	171	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	30	50	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	382	455	-	-
	Lal24g0349	714	PANTHER	OS05G0427100 PROTEIN-RELATED	22	704	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	1	51	-	-
	Lal24g0349	714	CDD	PB1_UP2	61	161	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	244	280	-	-
	Lal24g0349	714	Pfam	PB1 domain	73	162	IPR000270	GO:0005515
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	695	714	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	14	28	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	698	714	-	-
	Lal24g0349	714	MobiDBLite	consensus disorder prediction	244	282	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal24g0349	Lal-Chr24	2481302	2484142	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal24g0349	55	212	MAP Kinase Kinase Kinase	AT1G16270	35.583	3.67e-25	110

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal24g0349	-		-	gmx:100775954	808.135