Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal24g0341 | ATGGCTTCACGAAAAGTCGTATCCTCTCTCCTTCGCTCTTCTCTTCGTCGATCTTCACCCAAACCTTTTATTCCCACTTCAGCTTCCAGATCCAGAATTCCTTCTTCTAATCCTCGTCCTTCTCCCTATGGTTATCTTTTGAATCGTGTACACTCCACCGCCACCGCCAAAGCCTCTCCTTCTCCACCATCCCCCGCTCCTAAGGACAGTGGCGCTAGTGGTAAGATCGTCGATGAATACACCGGTAAGGGCGCAATCGGTCACGTTTGCCAGGTCATCGGTGCTGTCGTCGACGTCAGATTCGAAGAGGGTTTGCCACCAATTTTGACAGCCCTCGAGGTTCTTGGTCATGAAACACGGTTGGTGTTGGAGGTGGCGCAGCATTTGGGTGAGGGTGTTGTCAGAACTATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTCCTCAACACCGGATCCCCAATTACTGTTCCTGTTGGTAGGGCTACCCTTGGTCGTATTATAAATGTCATTGGAGAGGTTATTGACGAGAAGGGTCCCCTTGAAACCGAGCATTATTTGCCCATTCACAGAGAAGCTCCTGCTTTTGTTGAACAAGCAACAGAACAACAGATTCTTGTTACTGGAATCAAGGTTGTTGACCTTCTTGCACCGTACCAAAGGGGAGGAAAGATTGGATTGTTCGGTGGTGCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTTATTAACAATGTGGCTAAGGCTCATGGTGGTTTCTCTGTTTTTGCTGGTGTTGGAGAACGAACTCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGATAAGCAGGCTGAGAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTTGGTCTGACTGGGCTTACTGTGGCTGAACACTTCCGTGATGCTGAAGGCCAAGATGTGCTTCTCTTCGTTGATAACATTTTCCGTTTCACCCAAGCTAACTCAGAGGTGTCTGCTTTGCTTGGTCGCATCCCTTCTGCTGTTGGTTACCAACCAACACTGTCTACCGATCTTGGAGGTCTTCAAGAGCGTATCACAACAACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCCACTACCTTTGCTCACTTGGATGCTACAACAGTGTTATCACGACAGATCTCCGAGCTGGGTATCTATCCTGCTGTTGACCCCTTAGATTCCACATCTCGTATGCTTTCCCCACTTATTTTGGGTGAGGACCACTACGAAACTGCTCGTGGTGTACAAAAGGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAATTGACTGTTGCCCGTGCTCGTAAAATTCAAAGATTCTTGAGCCAGCCTTTCCACGTTGCTGAGGTCTTCACTGGTGCCCCTGGCAAATATGTTGACTTGAAGGAGAGCATTTCCAGTTTCCAGGGTATGGCCTTTTCAATAGGTGTATTGGATGGCAAATATGATGACTTGTCAGAGCAGTCATTTTACATGGTTGGAGGTATTGAAGAGGTCATTGCAAAGGCAGAGAAGATTGCTAAGGAATCGTCCTCTTAA | 1692 | 0.4722 | MASRKVVSSLLRSSLRRSSPKPFIPTSASRSRIPSSNPRPSPYGYLLNRVHSTATAKASPSPPSPAPKDSGASGKIVDEYTGKGAIGHVCQVIGAVVDVRFEEGLPPILTALEVLGHETRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEVIDEKGPLETEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESISSFQGMAFSIGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESSS | 563 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal24g0341 | 563 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 212 | 433 | IPR000194 | GO:0005524 | |
| Lal24g0341 | 563 | SUPERFAMILY | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 83 | 157 | IPR036121 | GO:0046034|GO:1902600 | |
| Lal24g0341 | 563 | TIGRFAM | atpD: ATP synthase F1, beta subunit | 86 | 557 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
| Lal24g0341 | 563 | CDD | ATP-synt_F1_beta_C | 440 | 553 | - | - | |
| Lal24g0341 | 563 | SUPERFAMILY | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 436 | 558 | - | - | |
| Lal24g0341 | 563 | PANTHER | ATP SYNTHASE | 3 | 562 | - | - | |
| Lal24g0341 | 563 | SMART | AAA_5 | 224 | 496 | IPR003593 | - | |
| Lal24g0341 | 563 | Coils | Coil | 551 | 563 | - | - | |
| Lal24g0341 | 563 | Hamap | ATP synthase subunit beta [atpB]. | 84 | 557 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
| Lal24g0341 | 563 | Gene3D | - | 158 | 435 | IPR027417 | - | |
| Lal24g0341 | 563 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Lal24g0341 | 563 | Gene3D | - | 75 | 157 | - | - | |
| Lal24g0341 | 563 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
| Lal24g0341 | 563 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 424 | 433 | IPR020003 | GO:0005524 | |
| Lal24g0341 | 563 | CDD | F1-ATPase_beta | 157 | 438 | - | - | |
| Lal24g0341 | 563 | PIRSF | ATPase_subunit_beta | 6 | 563 | - | - | |
| Lal24g0341 | 563 | Pfam | ATP synthase F1 beta subunit | 1 | 49 | IPR020971 | GO:0000275|GO:0005524|GO:0006754|GO:0016887 | |
| Lal24g0341 | 563 | Pfam | ATP synthase alpha/beta family, beta-barrel domain | 89 | 155 | IPR004100 | GO:0046034|GO:1902600 | |
| Lal24g0341 | 563 | Gene3D | - | 436 | 563 | IPR024034 | - | |
| Lal24g0341 | 563 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 159 | 439 | IPR027417 | - | |
| Lal24g0341 | 563 | Gene3D | ATP synthase, F1 beta subunit | 1 | 52 | IPR042079 | - | |
| Lal24g0341 | 563 | PANTHER | ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL | 3 | 562 | - | - | |
| Lal24g0341 | 563 | CDD | ATP-synt_F1_beta_N | 85 | 158 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal24g0341 | Lal-Chr24 | 2402668 | 2406206 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal24g0341 | 122 | 494 | Primary Pumps ATPases(2) | AT1G20260 | 28.429 | 8.13e-29 | 118 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal24g0341 | K02133 | - | gmx:100789705 | 931.398 |