Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0340 ATGGCTTCACGAAAAGTCGTATCCTCTCTCCTTCGCTCTTCTCTTCGTCGATCTTCACCCAAACCTTCTATTCCCACTTCAGCTTCCAGATCCAGAATTCCTTCTTCTAATCCTCGTCCTTCTCCCTATGGTTATCTTTTGAATCGTGTACACTCCACCGCCACCGCCAAAGCCTCTCCTTCTCCACCACCTCCCGCTCCTAAGGACAGTGGCGCTAGTGGTAAGATCGTCGATGAATACACCGGCAAGGGCGCAATCGGTCACGTTTGCCAGGTCATCGGTGCTGTCGTCGACGTCAGATTCGAAGAGGGTTTGCCACCGATTTTGACTGCCCTCGAGGTTCTTGATCATGAAACACGGTTGGTGTTGGAGGTGGCTCAGCATTTGGGTGAGGGTGTTGTCAGAACTATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTCCTCAACACCGGATCCCCAATTACTGTTCCTGTTGGTAGGGCTACCCTTGGTCGTATTATAAATGTCATTGGAGAGGTTATTGATGAGAAGGGTCCCCTTGAAACCGAGCATTATTTGCCCATTCACAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACAGAACAACAGATTCTTGTTACTGGAATCAAGGTTGTTGACCTTCTTGCACCGTACCAAAGGGGAGGAAAGATTGGATTGTTCGGTGGTGCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTTATTAACAATGTGGCTAAGGCTCATGGTGGTTTCTCTGTTTTTGCTGGTGTTGGAGAACGAACTCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGATAAGCAGGCTGAGAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTTGGTCTGACTGGGCTTACTGTGGCTGAACACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTCTTCGTTGATAACATTTTCCGTTTCACCCAAGCTAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCTTCTGCTGTTGGTTACCAACCAACACTGTCTACCGATCTTGGAGGTCTTCAAGAGCGTATCACAACAACCAAGAAAGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCCACTACCTTTGCTCACTTGGATGCTACAACAGTGTTATCACGACAGATCTCCGAGCTGGGTATCTATCCTGCTGTTGACCCCTTAGATTCCACATCTCGTATGCTTTCCCCACTTATTTTGGGTGAGGACCACTACGAAACTGCTCGTGGTGTACAAAAGGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAATTGACTGTTGCCCGTGCTCGTAAAATTCAAAGATTCTTGAGCCAGCCTTTCCACGTTGCTGAGGTCTTCACTGGTGCCCCTGGCAAATATGTTGACTTGAAGGAGAGCATTTCTAGCTTCCAGGTTACGGCCTTTTCAATAGGTGTATTGGATGGCAAATATGATGACCTGTCAGAGCAGTCATTTTATATGGTTGGAGGTATTGAAGAGGTCATTGCAAAGGCAGAGAAGATTGCTAAGGAATCGTCCTCTTCTTAA 1695 0.4714 MASRKVVSSLLRSSLRRSSPKPSIPTSASRSRIPSSNPRPSPYGYLLNRVHSTATAKASPSPPPPAPKDSGASGKIVDEYTGKGAIGHVCQVIGAVVDVRFEEGLPPILTALEVLDHETRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEVIDEKGPLETEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESISSFQVTAFSIGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESSSS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0340 564 CDD ATP-synt_F1_beta_C 440 553 - -
Lal24g0340 564 PIRSF ATPase_subunit_beta 6 563 - -
Lal24g0340 564 SMART AAA_5 224 496 IPR003593 -
Lal24g0340 564 MobiDBLite consensus disorder prediction 1 42 - -
Lal24g0340 564 Gene3D - 436 564 IPR024034 -
Lal24g0340 564 Pfam ATP synthase F1 beta subunit 1 49 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Lal24g0340 564 ProSitePatterns ATP synthase alpha and beta subunits signature. 424 433 IPR020003 GO:0005524
Lal24g0340 564 TIGRFAM atpD: ATP synthase F1, beta subunit 86 557 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lal24g0340 564 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 212 433 IPR000194 GO:0005524
Lal24g0340 564 Gene3D ATP synthase, F1 beta subunit 1 52 IPR042079 -
Lal24g0340 564 PANTHER ATP SYNTHASE 3 562 - -
Lal24g0340 564 CDD F1-ATPase_beta 157 438 - -
Lal24g0340 564 Gene3D - 75 157 - -
Lal24g0340 564 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 562 - -
Lal24g0340 564 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 436 558 - -
Lal24g0340 564 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 157 IPR036121 GO:0046034|GO:1902600
Lal24g0340 564 Hamap ATP synthase subunit beta [atpB]. 84 557 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lal24g0340 564 Pfam ATP synthase alpha/beta family, beta-barrel domain 89 155 IPR004100 GO:0046034|GO:1902600
Lal24g0340 564 Gene3D - 158 435 IPR027417 -
Lal24g0340 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Lal24g0340 564 MobiDBLite consensus disorder prediction 1 76 - -
Lal24g0340 564 CDD ATP-synt_F1_beta_N 85 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0340 Lal-Chr24 2391326 2394925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0340 122 494 Primary Pumps ATPases(2) AT1G20260 28.429 6.99e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0340 K02133 - gmx:100789705 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0340 24 2391326 2394925 Lal24g0340 24 2391326 2394925 ECH
Lal12g0427 12 2996166 2999921 Lal24g0340 24 2391326 2394925 LSH