Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0326 ATGGAGTCAGTGCCTTCTGATGTATCTACTTCACCTCCTATTAAGGAGACCGGAGGACAGGCTTCTGCGGGTGTAGTATCTAGGCAAGATAATTCTGCTCACGAGGCACCGTCTAGGGTGTCTCCCACGGGCATATCATCTTGGGCTAAAAACTTGAAAGTTCCTCAGCCATTTTCTGGCTCCCAAGATGAATCATCAAGTGGTAATACCGGGAAATCAGCTTTTTCTCGCATTACCAGCAATATAGGGTTGCGGTTGTCTCCGAAATCTCCTCCTGTGGCAGAGGACAGTTCCAGTGAAACAGAAGGTCAATCTAACTTTTTTGGAAGTATTACAAAAGGCCTCGTTGACACTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCACGGCATGTTGTTTCTCAGAATAAGCGCAGATATCAGGAAGGAGGCTTTGATTTAGATATGACATATATCACAGAAAACATCATTGCTATGGGGTTCCCTGCTGGCGACATGAGCTCTGGGTTTTTTGGTTACGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAGACTCAGCATAAGGATAAATACAAAGTATACAATCTTTGTTCTGAGCGGCTGTATGATGCATCATTGTTTGAGGGGAAGGTTGCTAGCTTTCCATTTGATGACCATAATTGCCCACCAATGCAACTGATTATATCATTTTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCGAGGACTGGGTTGATGATTTCTAGTCTTCTGTTATTCTTAAAGTTTTTCCCAACTGCTGAGGAGTCAATGGATTACTACAATCAGAAAAGATGTATTGATGGAAAAGGGCTTGTTCTGCCTAGTCAGATTAGGTATGTTAAATATTTTGAACGGGTCTTGACTTACTTCAATGGTGAAAATCCACCTCCTCGCAGGTGTATGCTCAGGGGATTTCGGCTCCACAGATGCCCTTATTGGATCAGGCCCTCTATAACTGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGAACTTTTGCCAGAAGACTTTTGGTTTAGTGCGCCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTTACAGAGTTGTCTGGGGACTTCAAAATCCATTTTCATGACCGACAAGGAGAATTTTACTGTTGGTTGAACACAACTATGACAGAAAATCGAAAAGTGTTGAACACTAGTGACCTCGATGGATTTGACAAGAGGAAATTGCCTTCTCCAGGATTTCTGGTTGAGGTTGTGCTAGTGGATTACAATGGTAATGTTGTAACTTCCAAAGTTGAGACTGTGACGAAGAACTCAGATGAGAGTTCAAGTAATAATCCCACCACAGTTGAAGCGAGCACCCCTGCATTGAATGTGGACAAAGAATCAGGGAGTAATGATAAAGATGACGTGTTTTCAGATGGTGAGACAGAGCATCCTGCATCTTCAAGAACCAAGCAAACAAAAGCAGCTTCTGAAGCAGTCGAAACAGGTACAAATGCGACCTCTGGGACCGAGTCCAACAGAATTTTAAATCAAATCACAAATTTAACACATGCCACAGAACAAGTTTCATTGGGGAACAGGAGCTCTACACCAATTCATAGCTCTAGTGAGCCAAAAAGTGATGTTGATGGAAGAACAATGTTGGTTCATGAGGCACCCAGCACAGAAAGTGAGTTTAAAGCCATGGCTGCAGATGCTTCTGTTTTTACATTTGGTGATGAAGAAGACTATGAAAGTGATTGA 1836 0.4248 MESVPSDVSTSPPIKETGGQASAGVVSRQDNSAHEAPSRVSPTGISSWAKNLKVPQPFSGSQDESSSGNTGKSAFSRITSNIGLRLSPKSPPVAEDSSSETEGQSNFFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETQHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPMQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGENPPPRRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKELLPEDFWFSAPKKGVMVFALPGEPGLTELSGDFKIHFHDRQGEFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFLVEVVLVDYNGNVVTSKVETVTKNSDESSSNNPTTVEASTPALNVDKESGSNDKDDVFSDGETEHPASSRTKQTKAASEAVETGTNATSGTESNRILNQITNLTHATEQVSLGNRSSTPIHSSSEPKSDVDGRTMLVHEAPSTESEFKAMAADASVFTFGDEEDYESD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0326 611 MobiDBLite consensus disorder prediction 553 568 - -
Lal24g0326 611 MobiDBLite consensus disorder prediction 463 536 - -
Lal24g0326 611 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Lal24g0326 611 MobiDBLite consensus disorder prediction 513 536 - -
Lal24g0326 611 MobiDBLite consensus disorder prediction 463 490 - -
Lal24g0326 611 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 10 611 - -
Lal24g0326 611 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Lal24g0326 611 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 232 292 IPR000387 GO:0016311|GO:0016791
Lal24g0326 611 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 10 611 - -
Lal24g0326 611 MobiDBLite consensus disorder prediction 1 105 - -
Lal24g0326 611 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 152 321 IPR029021 -
Lal24g0326 611 SMART PTEN_C2_2 323 451 IPR014020 -
Lal24g0326 611 MobiDBLite consensus disorder prediction 553 576 - -
Lal24g0326 611 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Lal24g0326 611 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Lal24g0326 611 MobiDBLite consensus disorder prediction 491 512 - -
Lal24g0326 611 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0326 Lal-Chr24 2312249 2317547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0326 30 611 Protein tyrosine phosphatase (PTP) family AT3G19420 70.051 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0326 K01110 - gmx:100784003 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0326 24 2312249 2317547 Lal24g0326 24 2312249 2317547 ECH
Lal12g0410 12 2909114 2914190 Lal24g0326 24 2312249 2317547 ECH
Lal12g0410 12 2909114 2914190 Lal24g0326 24 2312249 2317547 LSH
Lal15g0178 15 1241035 1247320 Lal24g0326 24 2312249 2317547 PCT