Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0308 ATGATGAACAAGGAAGATGAAACAACTTTTACAACAGCCAAGGAACAACCAAGTGAAGTGATGACCAGAGACAAGAACAATGACGGAAGCGACGGTGACAATCAAGAAGAGTGGCTGAACTTGAGCTTAGGAGGTACTTCATGCCTAACGGCGGAAGATAGTGATTCACAATCAAGACCAGCTACAACCAAAGTGTTTTCATGCAACTTCTGCATGAGGAAGTTCTTTAGTTCACAAGCATTAGGAGGTCATCAGAACGCCCATAAAAGGGAGAGAGGTGCTGTCAAAAGATATCAGTCCCAGAGGACGATGACAATGATGGGATTGTCCATGAACAATCCCATGCTTCGATCTCTGGGTGTCCAGCCCCATGCGATCGTTCACAAACCAAGCAGAGGTGGTGGAACTATGATGGCACCAAGCTTTCATGATGCATATGCAATGGCATGTACACCTTTCATGTCTGAGGAAAAAACTGATCTGGCATGGCCAGGCAGCTTTCGTTTGGTTCCACAACAATCTGAGCCACCACAGGAGTCACTCAAGCTTGATTTAAACCTCAGACTTTGA 570 0.4561 MMNKEDETTFTTAKEQPSEVMTRDKNNDGSDGDNQEEWLNLSLGGTSCLTAEDSDSQSRPATTKVFSCNFCMRKFFSSQALGGHQNAHKRERGAVKRYQSQRTMTMMGLSMNNPMLRSLGVQPHAIVHKPSRGGGTMMAPSFHDAYAMACTPFMSEEKTDLAWPGSFRLVPQQSEPPQESLKLDLNLRL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0308 189 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lal24g0308 189 Gene3D Classic Zinc Finger 49 113 - -
Lal24g0308 189 MobiDBLite consensus disorder prediction 168 189 - -
Lal24g0308 189 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 189 - -
Lal24g0308 189 MobiDBLite consensus disorder prediction 1 32 - -
Lal24g0308 189 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Lal24g0308 189 MobiDBLite consensus disorder prediction 1 38 - -
Lal24g0308 189 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 189 - -
Lal24g0308 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0308 Lal-Chr24 2190305 2190874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0308 26 186 C2H2 Transcription Factor Family AT1G24625 35.882 1.60e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0308 - - ahf:112779836 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0308 24 2190305 2190874 Lal24g0308 24 2190305 2190874 ECH
Lal13g0392 13 2460810 2461319 Lal24g0308 24 2190305 2190874 LSH