Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0293 ATGGAATCTACTCATCTGATATCTGAAGAATGGTGTTCTCTTAGTGGACTAAACATAGCTGAAGAAGCTGACTTTATGACTCAGTTGCTTAGTGCAAATTCCACTTTTTGGTCAAGCCATGAATCCACAAACACCAACAACAATTCATGTTTTCCTTCAAATGTTGCAAATTCTAACTTCTTCTATTGCTCCCAAGGGAGTAGCTCTAGTACTGATAATAGTGGTAATATATTTCACACCACAAGTAGTGGAACCTGTTCCTTTGATCCAGCAACAAATTTTGACTCAATGTCCATGGATTTTTGCTCTGGTGATTCCAAATTTAGTCCACATATTTTTCAATGGAATGGCAACTTAAGCCAAGAGATAAATGTACTACTAAACAGTGATGAAGATTCAGGCATTGACCAAGGGAAACCAATTCTTAAAGACTATAATTTGCATGCAGAAGATAATAAAAGCAGAAACATGGTGAACCCAGTTAAGAGATCAAGGAGTTCAATAGAGGAGGTCTCAGAAAACATGAGGAATGTCAAATCAAGGAAGATTCCAAAACCTGCTTCTATGAGTAGCTTCAATGTAGGATTAGCTTCAAATTTTGGCCCTTCATCTAGCAGCTATAATTCAGAAGGTGACTCTAATCCTTCTTTGGAGCTAAATGGAGTTGCATCTCCAAGTCTGAGCCCAAAAGATTCTACACCTAATAGAAAATCAATATCTAACAGCTCTCTAGCCACTGGTCCACAAACCCTTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAGCCTTGTCCCTAATGGAACTAAGGTGGATATTAGCACCATGCTTGAGGAAGCTGTCACATATGTAAAGTTCTTACAGCACCAAATTAAGCTTCTGAGCTCTGAAGATCTATGGATGTATGCTTCTATTGCTTACAATGGAATCAATATTGGACTAGACATGGTTACAACCAAAGGACTATAG 987 0.3779 MESTHLISEEWCSLSGLNIAEEADFMTQLLSANSTFWSSHESTNTNNNSCFPSNVANSNFFYCSQGSSSSTDNSGNIFHTTSSGTCSFDPATNFDSMSMDFCSGDSKFSPHIFQWNGNLSQEINVLLNSDEDSGIDQGKPILKDYNLHAEDNKSRNMVNPVKRSRSSIEEVSENMRNVKSRKIPKPASMSSFNVGLASNFGPSSSSYNSEGDSNPSLELNGVASPSLSPKDSTPNRKSISNSSLATGPQTLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVTYVKFLQHQIKLLSSEDLWMYASIAYNGINIGLDMVTTKGL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0293 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 309 IPR036638 GO:0046983
Lal24g0293 328 Gene3D - 250 303 IPR036638 GO:0046983
Lal24g0293 328 SMART finulus 250 299 IPR011598 GO:0046983
Lal24g0293 328 MobiDBLite consensus disorder prediction 203 249 - -
Lal24g0293 328 PANTHER TRANSCRIPTION FACTOR BHLH54 24 321 - -
Lal24g0293 328 Pfam Helix-loop-helix DNA-binding domain 254 294 IPR011598 GO:0046983
Lal24g0293 328 MobiDBLite consensus disorder prediction 153 188 - -
Lal24g0293 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 293 IPR011598 GO:0046983
Lal24g0293 328 CDD bHLH_AtIND_like 245 307 - -
Lal24g0293 328 MobiDBLite consensus disorder prediction 203 253 - -
Lal24g0293 328 MobiDBLite consensus disorder prediction 166 180 - -
Lal24g0293 328 Coils Coil 161 181 - -
Lal24g0293 328 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0293 Lal-Chr24 2108383 2110168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0293 201 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43175 65.000 3.15e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal24g0293 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0293 - - gmx:100816788 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0293 24 2108383 2110168 Lal24g0293 24 2108383 2110168 ECH
Lal12g0383 12 2712335 2713704 Lal24g0293 24 2108383 2110168 LSH
Lal13g0372 13 2329717 2331379 Lal24g0293 24 2108383 2110168 LSH