Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0292 ATGGAGCCTTCTGAAGAATGGAGTTCCCTTAGTGGATTGTACATTGCTGATGAAGCTGATCTTATGAGCCAGTTGCTTGATAACTGCTCGGTCCCGGAGAAGCTCTACCGAAATTTCAATTTGGAAATTCCATCTGCATTATGGGATGATCATGAATCAACACTAGCTAGTGTGACAGGCATTAACAAATGTTCATATTATCCTGAAAATGTTGCTAATACTAATTTTTTGTATAGTAGTAATAATTTCCAAAGTACAAGTGGTGGCAATTGCTACTTTAATTTTGATTCAGTAACCAACACTGGCTATGTTCCTATGGGTTTTTCCTTTGTAGATTCCAAGTTCAGCCCTTATAGTTTTCAAGGGAATGAGAACCAATATATAAATGAAAATATTGAAGAGTTAGGTGTAGAGGTTGTTGCTCACCAGAATTTGCAGGCTCACAAGGAATGTGAAGTACTAGTTTCTGAGCCAGCAGAAGAGGATATAACCTGCAACCTGGAGAGTTCGGGGAAACGATCTAGGAGATCGACCGAGGTCCGGAAGAACAAGAAAAATGTTAAACCAAAGAAGAAATTAAAATCTGCTTCTATGAGCAACACTGAAGAGGATACTAGTTCTGGTCTTCAGGGTCTGAGCTTGAGCAATTACTGCTCAGAGGATGATTCCAATGCCTCTCAAGAGATAAATGGAGAAGGGTCTTCAAGCTTGACCTCAAAAGATCTCAAGTCAAATGGTAAACCAAGGTGTAGTAGAGGTTCTGCTACTGATCCACAGAGCATCTATGCAAGAAGAAGAAGAGAAAGGATAAATGGAAGGTTGAAAATCCTACAAACTCTAGTCCCCAATGGAACAAAGGTGGATATCAGCACTATGCTGGAGGAAGCTATGGACTATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTAAGCTCTGATGATCTCTGGATGTATGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATCTCACCCCAATAAAACAACCATAA 1023 0.3978 MEPSEEWSSLSGLYIADEADLMSQLLDNCSVPEKLYRNFNLEIPSALWDDHESTLASVTGINKCSYYPENVANTNFLYSSNNFQSTSGGNCYFNFDSVTNTGYVPMGFSFVDSKFSPYSFQGNENQYINENIEELGVEVVAHQNLQAHKECEVLVSEPAEEDITCNLESSGKRSRRSTEVRKNKKNVKPKKKLKSASMSNTEEDTSSGLQGLSLSNYCSEDDSNASQEINGEGSSSLTSKDLKSNGKPRCSRGSATDPQSIYARRRRERINGRLKILQTLVPNGTKVDISTMLEEAMDYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNLTPIKQP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0292 340 MobiDBLite consensus disorder prediction 166 262 - -
Lal24g0292 340 MobiDBLite consensus disorder prediction 199 258 - -
Lal24g0292 340 CDD bHLH_AtIND_like 255 317 - -
Lal24g0292 340 Pfam Helix-loop-helix DNA-binding domain 264 304 IPR011598 GO:0046983
Lal24g0292 340 PANTHER TRANSCRIPTION FACTOR BHLH54 4 336 - -
Lal24g0292 340 Gene3D - 257 317 IPR036638 GO:0046983
Lal24g0292 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 319 IPR036638 GO:0046983
Lal24g0292 340 SMART finulus 260 309 IPR011598 GO:0046983
Lal24g0292 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983
Lal24g0292 340 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 336 - -
Lal24g0292 340 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0292 Lal-Chr24 2104263 2106222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0292 1 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 38.147 5.88e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal24g0292 HLH 9.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0292 - - ccaj:109795401 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0382 12 2708326 2709974 Lal24g0292 24 2104263 2106222 LSH
Lal13g0371 13 2324727 2326241 Lal24g0292 24 2104263 2106222 LSH