Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0289 ATGGCCAGCTTTGGAGGAACCACACAAAAGTGCATGGCATGTGACAAAACCGTGTATCTTGTTGACAAGTTAGCCGCAGATGGCCGTATCTATCATAAGGCTTGCTTCCGATGCCATCATTGCCGGAATACCCTTAAGAATAGTAAAGTAGTGGCAAACATTTTCTTGGGCACCAAAGACAAATGTGTGGGTTGCAAAAAGACTGTCTATCCCATTGAGAGGGTTACGATTAATGGAAATCCCTACCATAAATGCTGCTTCAAATGTACCTACGGAGGTTGTACTATAAACTCAGCAAATTTTGTTACACATGAGGGGAAACTCTACTGCAAACATCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGTCAGCTTGAGAATGAACTAGATAAAAATTCTATGACTGACATGGGAATTGATGCTTAA 432 0.4051 MASFGGTTQKCMACDKTVYLVDKLAADGRIYHKACFRCHHCRNTLKNSKVVANIFLGTKDKCVGCKKTVYPIERVTINGNPYHKCCFKCTYGGCTINSANFVTHEGKLYCKHHHIQLFKEKGNYSQLENELDKNSMTDMGIDA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0289 143 Gene3D Cysteine Rich Protein 2 55 - -
Lal24g0289 143 Gene3D Cysteine Rich Protein 56 142 - -
Lal24g0289 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 88 127 - -
Lal24g0289 143 ProSiteProfiles LIM domain profile. 60 120 IPR001781 -
Lal24g0289 143 Pfam LIM domain 62 117 IPR001781 -
Lal24g0289 143 Pfam LIM domain 11 49 IPR001781 -
Lal24g0289 143 PANTHER OS06G0237300 PROTEIN 1 49 IPR045268 GO:0051015
Lal24g0289 143 PANTHER OS06G0237300 PROTEIN 47 138 IPR045268 GO:0051015
Lal24g0289 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Lal24g0289 143 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Lal24g0289 143 SMART lim_4 61 113 IPR001781 -
Lal24g0289 143 SMART lim_4 10 60 IPR001781 -
Lal24g0289 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 54 87 - -
Lal24g0289 143 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 47 138 - -
Lal24g0289 143 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0289 Lal-Chr24 2077970 2090978 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal24g0289 LIM 5.7e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0289 K09377 - gmx:100306027 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0375 12 2667798 2680985 Lal24g0289 24 2077970 2090978 LSH
Lal13g0368 13 2312770 2315310 Lal24g0289 24 2077970 2090978 LSH