Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0283 ATGTCTAACTCAGTTTCTAACTCTAACCCTAGGAGGAGCAAGGGTCGCCAAAAGATTGAAATGAAAAAGATGACAAATGAGAGTAATCTTCAAGTTACTTTCTCCAAACGTCGAAGTGGTCTTTTCAAGAAAGCGAGTGAACTTTGCACCCTTTGTGGTGTAGAAGTTGCTCTCATTGTTTTCTCTCCTGGAGAGAAGGTTTTCTCGTTTGGTCACCCCAATGTTGATACGGTCATAGACCGCTATTTGATGAGGGCCCCACAACAGAATTCAGGAACCATGCAGTTCATTGAGGCTCATCGTAGTGCTAATGTTCGTGAACTAAATGCTCAACTAACTCAGATCAATGCTGATCTTGAGATAGAGAAGAAGTGCAGTGATGAGTTGAACCGTTTGCATATGGCTGCTAAAGGCCAATTCTGGTGGGCTGCACCAATTGATGAAATGAATAACACACAACTTGATCAGTTCAAATTGGCTTTGAAGGAGTTGAAGAAGGGTTTCTCTCGTCAAGGTAGTACTCCTAATCCACCTCCTCAGTTTTTTGCAGGTGTCTCAAATTCTAACAACCCTATGTTGCTTCATCAACCACTATGTCCTCCACAACCTCAAATGTTTCCACTTACAACACAACAGATTCCACAACACCCTTCTATGATGATGTTTGATGGTGGCATGATGCGTTATCCTGGATTCAACAACAATATTGGAGGGTTTGGACAAGGTGGTGGATTCTTTTGA 741 0.4224 MSNSVSNSNPRRSKGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGVEVALIVFSPGEKVFSFGHPNVDTVIDRYLMRAPQQNSGTMQFIEAHRSANVRELNAQLTQINADLEIEKKCSDELNRLHMAAKGQFWWAAPIDEMNNTQLDQFKLALKELKKGFSRQGSTPNPPPQFFAGVSNSNNPMLLHQPLCPPQPQMFPLTTQQIPQHPSMMMFDGGMMRYPGFNNNIGGFGQGGGFF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0283 246 PANTHER MADS BOX PROTEIN 13 167 - -
Lal24g0283 246 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Lal24g0283 246 Gene3D - 26 93 IPR036879 GO:0003677|GO:0046983
Lal24g0283 246 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Lal24g0283 246 MobiDBLite consensus disorder prediction 1 26 - -
Lal24g0283 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Lal24g0283 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 13 167 - -
Lal24g0283 246 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Lal24g0283 246 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Lal24g0283 246 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Lal24g0283 246 CDD MADS_MEF2_like 15 83 IPR033896 GO:0000977|GO:0045944
Lal24g0283 246 SUPERFAMILY SRF-like 15 87 IPR036879 GO:0003677|GO:0046983
Lal24g0283 246 Gene3D - 94 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0283 Lal-Chr24 2043148 2043888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0283 11 189 Type I MADS-box Gene Family AT5G60440 54.348 4.18e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal24g0283 SRF-TF 8.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0283 - - lang:109356189 280.026