Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0281 ATGTCTAAGAAAAAGTCTAGTTTAGGTCGCCAAAAGATTCCTATTGAGAAAATACCAAAAAAAAGTCACCTACAAGTTACTTTCTCTAAGCGTCGTTCAGGACTATTCAAGAAAGCTAGTGAACTTTGCACCCTTTGTGGTGTAGAGATTGCAATTGTAGTTTTCTCTCCAGCTGATAAAGCATTCTCTTTTGGTCATCCTGAAGTCGAGTCGATTATCGATCGATATATGAGTCGAAACCCTCCATCGGAATGTAGTGCTCGCCAACTTGTTGAGGCTCATAGAAATGCTAACGTTCGTGATCTGAACATGCAATTAACTCAGCTTCTTAACCATTTGGAGATTGAAAAGAAAGGAGGAGAGGAGCTAGATCATGTGAGAAAAGCTAGGCAGAGGCAATTTTGGTGGGAGAGTCAGATTGATGAGCTTGGCTTGCATGAATTGCTACAATTGAAGGTTTCTATTGAGGAGCTGAAGAAAAATTTGGGAAAACATGCTAGCAAAATCATGATGGAACAAACAAATATGAGTTCAATTATTGGGGCTAATAATAATGGATTTGGACGTTATGATGCTTTTGAGAACAAATCTGGTGTTGGGTTGAATATTGCTTCTACCCTTCCTAATAATGCCTATTATCTTGACCACAGTGAATTGCTATGA 663 0.3876 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIIDRYMSRNPPSECSARQLVEAHRNANVRDLNMQLTQLLNHLEIEKKGGEELDHVRKARQRQFWWESQIDELGLHELLQLKVSIEELKKNLGKHASKIMMEQTNMSSIIGANNNGFGRYDAFENKSGVGLNIASTLPNNAYYLDHSELL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0281 220 Gene3D - 89 185 - -
Lal24g0281 220 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Lal24g0281 220 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Lal24g0281 220 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Lal24g0281 220 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Lal24g0281 220 PANTHER MADS BOX PROTEIN 7 178 - -
Lal24g0281 220 Coils Coil 96 116 - -
Lal24g0281 220 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Lal24g0281 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 178 - -
Lal24g0281 220 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Lal24g0281 220 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Lal24g0281 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Lal24g0281 220 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0281 Lal-Chr24 2019685 2020740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0281 7 212 Type I MADS-box Gene Family AT2G24840 48.815 8.65e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal24g0281 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0281 - - lja:Lj0g3v0067779.1 327.791