Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0264 ATGTATACTTCTTCTTCACCCTCTTCTTCTTCTTCACAAACCGGGTTGACCCGTTACACATCTGCACCCAGTTCTCTTCTCACCACCGCCGTTGACGCCGTCATCAGCTCCGGATCCCACCCTTTACCTCCTCAATACTTCTCCGGTGAGTCGTCGGAGCCCAATTTTCAGGCCTTGGGCGGAGGAGGATCTTCAACCAATTTGATCCGCCAGAAAAGCTCCCCCGCCGGGTTCCTCAACCACCTCGCCACCACTTTACATCATCCCGATAATGCAGCAGGCTTCACAATCACAAGGGGTGCCTCAACTTACTCCTCCCATGGACATGGTGTCTCTAACAGTGGCCATGCCCATACAGTTTCCAGGTTGAAGACTCAATTGAGCTTCACGGGCCAAGATTCTCTTTCCCAGATATCAGAAGTGAGTGAAAATATTGACGACGGTACCACTTCTGTTAATGGCCACCATAGACCTGTGCATTCTTATGCTACCACCAGCTTTGGAATGGAGCCTTGGGACAATTCTAATTCCATTGTCTTCTCCGCCCCACCAGCTAAACGGACTAAGAATATGGATGGAGATATTCTAAACTGTCTCAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACAGTGGAAAACCTATTGCATATTCCTGAAGATTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGTTGTGCTACTCATCCACGTAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAACTACAGGACCTTGTACCAAATATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTGGCTGTTCAACATATTAAAGGTCTTCAAAGTCAAGTTCAGGTAAACTTCACAGTGAACTTGAGAACTGCACTTGCGGATGCAAAGAAAGCATGTGATGGGTTATCCATTTCACAAGATTCTATGGCAACATGTTTAGAAGTCGAGGTTTTGACCGCGAAGAATGATAACTGA 1014 0.4645 MYTSSSPSSSSSQTGLTRYTSAPSSLLTTAVDAVISSGSHPLPPQYFSGESSEPNFQALGGGGSSTNLIRQKSSPAGFLNHLATTLHHPDNAAGFTITRGASTYSSHGHGVSNSGHAHTVSRLKTQLSFTGQDSLSQISEVSENIDDGTTSVNGHHRPVHSYATTSFGMEPWDNSNSIVFSAPPAKRTKNMDGDILNCLNALESQFSLPQTTLEMATVENLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQSQVQVNFTVNLRTALADAKKACDGLSISQDSMATCLEVEVLTAKNDN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0264 337 Gene3D - 236 298 IPR036638 GO:0046983
Lal24g0264 337 Pfam Helix-loop-helix DNA-binding domain 244 290 IPR011598 GO:0046983
Lal24g0264 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 300 IPR036638 GO:0046983
Lal24g0264 337 CDD bHLH_AtbHLH_like 244 295 IPR045239 -
Lal24g0264 337 MobiDBLite consensus disorder prediction 42 65 - -
Lal24g0264 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 295 - -
Lal24g0264 337 SMART finulus 245 295 IPR011598 GO:0046983
Lal24g0264 337 PANTHER TRANSCRIPTION FACTOR BHLH129 15 295 - -
Lal24g0264 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 289 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0264 Lal-Chr24 1889817 1894275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0264 68 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 56.223 2.46e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal24g0264 HLH 9.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0264 - - lang:109353868 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0339 12 2425386 2428464 Lal24g0264 24 1889817 1894275 LSH