Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0261 ATGGATCGAAAGAGGGGAATACCTTCTCCTTCTGCTTTTAATGCCAATGGCGCCGCCAAGAAATCTCGTCAAGAAATGGAGTCCTTTACAACTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGTACCTCTGGCTGTCCATTTGGTGAGGGATGTCATTTCCTGCATTATGTTCCCGGTGGCTTCAAAGCTGTCTCTCAGGTGATGAATGTTGGTAGCAGTCCTGCTATTCAACAAGGTGGCAGAAATCCAACTGCTCCACCTTCCTTCCCTGATGGGTCTTCTCCTCCAGCTGTTAAAAACCGGTTGTGCAGCAAGTATAATTCTGCTGGAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAAACCGACAGCCCCATCATATGAAGATCCTCGTGGCTTCCGACAAATGCAAAGCAATAGGATTGTTGGCCGAGCTGAGCCCCCACTTCCATCTCATGGAGCTGCTGCCGGCTTTGGAGCCTCAGCCACTGCTAAGATTAGTATCAATGCATCTCTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATTTGCCGCATAACTGGAGCAAAACTTTCTATTAGGGACCATGACTCAGATCCTAACCTTAGGAACATTGAGCTTGAAGGCAGTTTCGATCAGATCAAACAAGCCAGTGGCATGGTTCATGAACTTATCCTAAATGTCAGTTCTGGTGCCGCTGGACCTCCAATGAAAAACTTCACTTCACAAACTCATTCCCCTGCAAACAACTTCAAGACCAAGATGTGTGAAAACTTTGCTAAGGGAAATTGCACATTTGGGGACAGGATAAATGGCAACTATGAAACTTCAGATTCTAAAGTTCAAAGGCATGAAGAAAATGCAGGGTTTCAAAAGTTCAAAGGTGTTGTGCCTCAGCAAAATGGGCATTGGGGTGCACAAATATATGCAAACCACCAAAGAATCTGGTTAGGGACATTCAAGTCAGAAAGAGAAGCTGCAATGGCTTATGATAGTGCAGCCATCAAGCTTAGAAGTGGTGAAAGTCATAGGAACTTTCCATGGAATGACCAATCAGTTTTAGAGCCTCAGTTTCAAAGCCATTATAGCACAGAAGCAGTGCTTAATATGATAAAAGATGGAACATATCCATCAAAATTTGGTACATTTCTTAGGACTATAACACAAGTTGATGAGGAAGGTGGTGGTGTTAATATAAAATATGAACATATAAGAATGAAGGGTCATGAAGAAAACTTGTCATGCACCTTACTTTTTCAAAAAGAATTGACACCAAGTGATGTAGGGAAACTCAATAGACTTGTCATCCCAAAAAAGCATGCAGTTACATATTTCCCTAATGTTTTTGGCATTGCAGAAGCTAAGAATAATGAAATGGATGTTGACATTGAGGTTGTCTTTTATGACAAACTCATGAGGTCATGGAATTTTAGATATTGTTATTGGAATAGCAGCCAAAGTTATGTGTTCACAAGAGGGTGGAACAGGTTTGTGAAGGATAAGAAACTAAAGGCTAAAGACATCATTGCTTTTTATGTGTGTGAACCTATAAACTTGAGAAGAGGGGAAGAAGTATTTTCATTGATAGATGTAATCTATTATAATGAAGATCATGAGATAAAGCAATGTTTTGAAGAGAAGGAAGATGCAAAAAAAGCTATAGGAAACATGTTAACTTCAAGTGATGAAGGCCAAGAGACCAAGGATATAAAGGATTTTGATGCATTGCATTCACCAAATAATAGTGCACAGAAAGGTTTGAGGCTATTTGGTGTTTGTATAAACTGA 1836 0.4074 MDRKRGIPSPSAFNANGAAKKSRQEMESFTTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQVMNVGSSPAIQQGGRNPTAPPSFPDGSSPPAVKNRLCSKYNSAGGCKFGDKCHFAHGEWELGKPTAPSYEDPRGFRQMQSNRIVGRAEPPLPSHGAAAGFGASATAKISINASLAGAVIGKNGVNSKQICRITGAKLSIRDHDSDPNLRNIELEGSFDQIKQASGMVHELILNVSSGAAGPPMKNFTSQTHSPANNFKTKMCENFAKGNCTFGDRINGNYETSDSKVQRHEENAGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSAAIKLRSGESHRNFPWNDQSVLEPQFQSHYSTEAVLNMIKDGTYPSKFGTFLRTITQVDEEGGGVNIKYEHIRMKGHEENLSCTLLFQKELTPSDVGKLNRLVIPKKHAVTYFPNVFGIAEAKNNEMDVDIEVVFYDKLMRSWNFRYCYWNSSQSYVFTRGWNRFVKDKKLKAKDIIAFYVCEPINLRRGEEVFSLIDVIYYNEDHEIKQCFEEKEDAKKAIGNMLTSSDEGQETKDIKDFDALHSPNNSAQKGLRLFGVCIN 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0261 611 Gene3D - 431 544 IPR015300 -
Lal24g0261 611 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Lal24g0261 611 Pfam KH domain 176 238 IPR004088 GO:0003723
Lal24g0261 611 MobiDBLite consensus disorder prediction 15 35 - -
Lal24g0261 611 SMART rav1_2 308 369 IPR001471 GO:0003700|GO:0006355
Lal24g0261 611 SMART c3hfinal6 103 128 IPR000571 GO:0046872
Lal24g0261 611 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lal24g0261 611 SMART c3hfinal6 266 285 IPR000571 GO:0046872
Lal24g0261 611 ProSiteProfiles AP2/ERF domain profile. 308 363 IPR001471 GO:0003700|GO:0006355
Lal24g0261 611 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 244 IPR036612 GO:0003723
Lal24g0261 611 ProSiteProfiles Zinc finger C3H1-type profile. 266 285 IPR000571 GO:0046872
Lal24g0261 611 MobiDBLite consensus disorder prediction 77 100 - -
Lal24g0261 611 Gene3D K Homology domain, type 1 167 266 IPR036612 GO:0003723
Lal24g0261 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 105 128 IPR000571 GO:0046872
Lal24g0261 611 Pfam B3 DNA binding domain 435 529 IPR003340 GO:0003677
Lal24g0261 611 SUPERFAMILY DNA-binding domain 308 365 IPR016177 GO:0003677
Lal24g0261 611 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 288 611 - -
Lal24g0261 611 CDD AP2 307 365 IPR001471 GO:0003700|GO:0006355
Lal24g0261 611 MobiDBLite consensus disorder prediction 1 35 - -
Lal24g0261 611 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Lal24g0261 611 SMART B3_2 435 539 IPR003340 GO:0003677
Lal24g0261 611 CDD KH-I 177 238 - -
Lal24g0261 611 SMART kh_6 172 242 IPR004087 GO:0003676
Lal24g0261 611 ProSiteProfiles B3 DNA-binding domain profile. 435 548 IPR003340 GO:0003677
Lal24g0261 611 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lal24g0261 611 Gene3D - 96 133 - -
Lal24g0261 611 Gene3D AP2/ERF domain 307 364 IPR036955 GO:0003700|GO:0006355
Lal24g0261 611 ProSiteProfiles Type-1 KH domain profile. 173 237 - -
Lal24g0261 611 CDD B3_DNA 434 528 IPR003340 GO:0003677
Lal24g0261 611 Pfam AP2 domain 308 354 IPR001471 GO:0003700|GO:0006355
Lal24g0261 611 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Lal24g0261 611 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 288 611 IPR044800 GO:0003700
Lal24g0261 611 SUPERFAMILY DNA-binding pseudobarrel domain 432 532 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0261 Lal-Chr24 1850945 1857170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0261 308 576 RAV Transcription Factor Family AT1G51120 55.052 2.28e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Lal24g0261 B3 4.5e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0261 - - gmx:100792652 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0323 13 2027964 2033750 Lal24g0261 24 1850945 1857170 LSH