Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0247 ATGCCGCCGAAGCTTCGTAGTGGAGTGCGGCGTGGTCGTGCTGCGGTAGCAAAGGAAAGTTTGGAACCATCGAAGAGGAAAAACACCAAGAAGAAGGAAGAGTTTGTACCCGTAACTGTAGCTGTGAACGTTAACGCGATGGCTGATGCTAGTGGTGGATTAAGTGCTAATAAGGGTGTTGCTCCAGAGGATCCAGTTTTTCCTGAAAAGGTTCAAGTAGGAGGATCACCTATGTACAAGGTAGAGAGGAAATTAGGTAAAGGTGGATTCGGTCAGGTTTTTGTTGGCCGTCGTGAGCGGGCAGGCCCCGGAGCCGTGGAGGTGGCTCTGAAATTTGAACATAGAAACAGTAAAGGGTGTAATTATGGCCCACCTTATGAATGGCAAGTGTACAACACTCTTGGTGGTAGTCATGGAATACCAAAGGTACACTACAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGATATGCTTGGACCAAGTTTGTGGGATGTCTGGAATTCCTCAAGCCAAACGATGTCTAGTGAAATGGTCTCATGTATAGCTGTTGAGTCCTTATCGATACTGGAAAAGATGCACTCAAAAGGTTATGTGCATGGAGATGTAAAACCAGAGAATTTTTTATTAGGTCAGCCAGCAACAGCGCAAGAGAAGAAACTGTTCCTCGTTGACCTTGGATTAGCTACAAAGTGGAGAGACACCTCCAGTGGCCAGCATGTCGAATATGATCAACGCCCTGATATGTTCAGAGGGACAGTTCGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATACACACTTATCTTCCTTCATAAAGGCCGATTACCATGGCAAGGTTATCAGGGTGATACCAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGGACATCTCCTGAGATGCTATGCTGCTTTTGCCCTCCTCCTTTCAGACAGTTTCTTGAGGCTGTGGTGAGCATGAAATTTGATGAAGAACCTAACTATGCCAAACTAATTTCTTTGTTTGATGGTATAATCGGTCCTCCAGCATTGCGGCCAGTTAATACTGATGGTGCTCAAAAGGTTGGGCAAAAGCGGAGTAGATTGAATGTTGAGGAAGATGATGATTCACAGCCCAAAAAGAAGGTTCGTTTAGGAGTTCCCGCTATGCAATGGATTTCAATTTACAATGCAAGACTACCAATGAAACAAAGATATCATTACAATGTGGCGGATACAAGATTAGCACAACATATTGAGAAAGGGATTGCTGATGGCCTTCTTATTAGTTGTGTATCATCCTGTTCCAATCTTTGGGCACTCATTATGGATGCTGGAACTGGTTTTACACATCAAGTTTACAAGTGGTCACCTGTTTTCTTACACAAGGAATGGATCATGGAGCAATGGGATAAGAGCTATTACATTACTTCTATTGCAGGATCTGTTAATGGCGCCTCTCTTGTGGTGATGTCAAAAGGCACACAATATACTCAACAGTCATACAAAGTGAGTGACTCTTTCCCCTTCAAATGGATAAACAAGAAATGGAAAGAAGGTTTTCATGTCACCTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGCAATGCTGGATTCAGTGATCAGGTAGTTGAACTTGATTTTCTTTATCCAAGTGAGGGCATCCATCGACGTTGGGATAATGGTTATAGGATTACAGCAACTGCTGCCACACAGGATCAATCAGCTCTTATATTAAGTATTCCAAGGCGTAGGCCTGGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCCAGCACACATGTTAAGGATAAATGGTCGAAAAACCTCTATCTTGCATGTTTGTGCTATGGGCGTACAGTATGCTGA 1905 0.4341 MPPKLRSGVRRGRAAVAKESLEPSKRKNTKKKEEFVPVTVAVNVNAMADASGGLSANKGVAPEDPVFPEKVQVGGSPMYKVERKLGKGGFGQVFVGRRERAGPGAVEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQTMSSEMVSCIAVESLSILEKMHSKGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDTKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEAVVSMKFDEEPNYAKLISLFDGIIGPPALRPVNTDGAQKVGQKRSRLNVEEDDDSQPKKKVRLGVPAMQWISIYNARLPMKQRYHYNVADTRLAQHIEKGIADGLLISCVSSCSNLWALIMDAGTGFTHQVYKWSPVFLHKEWIMEQWDKSYYITSIAGSVNGASLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKEGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATQDQSALILSIPRRRPGDETQETLRTSQFPSTHVKDKWSKNLYLACLCYGRTVC 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0247 634 Gene3D Transferase(Phosphotransferase) domain 1 56 392 - -
Lal24g0247 634 ProSiteProfiles Protein kinase domain profile. 79 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0247 634 MobiDBLite consensus disorder prediction 12 33 - -
Lal24g0247 634 MobiDBLite consensus disorder prediction 362 386 - -
Lal24g0247 634 MobiDBLite consensus disorder prediction 1 33 - -
Lal24g0247 634 Pfam Protein kinase domain 79 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0247 634 SMART serkin_6 79 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0247 634 CDD STKc_CK1 78 348 - -
Lal24g0247 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lal24g0247 634 ProSitePatterns Protein kinases ATP-binding region signature. 85 111 IPR017441 GO:0005524
Lal24g0247 634 SUPERFAMILY Protein kinase-like (PK-like) 79 351 IPR011009 -
Lal24g0247 634 PANTHER CASEIN KINASE I-LIKE PROTEIN 59 607 - -
Lal24g0247 634 PANTHER CASEIN KINASE-RELATED 59 607 - -
Lal24g0247 634 MobiDBLite consensus disorder prediction 372 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0247 Lal-Chr24 1762176 1766591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0247 66 231 EF-hand Containing Proteins AT4G21940 28.249 7.07e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lal24g0247 Pkinase 1.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0247 - - lang:109336071 1260.74