Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Lal24g0246
ATGGCATCAACATCTTGTGTTAGTAAGAGTCCGCTATCAAAGAAAGAATCAGTACCAGCTTCAAGCTATTGTACATATCCTGCCCCTCTTGCAAAATATGAGGAGGTTGCAGAGAATTCCAAGATCTTCATGTTTACATTGGAGAAGCTCCATGCTGAAATGGGTACCAAGTTCATGATTCCCATTATTGGGGGAAAAGAACTAGATTTGCATCGCCTTTTTGTTGAAGTGACTTCTCGTGGAGGGTTTGAGAAGATAATTAGAGAGAGAAAATGGAAAGAAGTAACTGTAGTTTTCAATTTTCCATCAACAGCTACAAACGCTTCTTTTGTTCTCCGGAAGTATTATAGTTCATTGCTTTTCCATTATGAACAAATGTACTACTTCAAAGCCCCTGGATGGGCCCCTCCTACTACTTCTGATGCTTTGCGGAGTCAACCAACGATGCCATCTCCTGCTAAAAATATTCACTCTTTGCAGCCTCACTTAGGAACTCAATCACATGCCTTTCAGCAGTCAAGTTCTAATGCTGCTGAATTACGTGAAGTAATGCCAGCATCTTCGTCAAGCTCTTCAGTCATTGGAGTCATTGATGGAAAATTCGAAAGTGGTTACCTAGTTACTGTCACGATAGGTTCAGAGAAACTCCAAGGTGTTCTTTACCAAGAAGCTCCACAACACACCACATTTTTGGCATCCGATCCTAGTTTTTCGGTTAATAACAACAATCTCTCTGCTCCATCGGGTGTCGCTCGTCGCCGACGGAGGAAAAAATCCGAAATAAAACGGAGAGATCCCGCTCATCCGAAACCCAACCGAAGTGGTTACAATTTCTTCTTCGCAGAACAACACGCAAGACTAAAATCACTTCACCAAGGGAAAGACAGGGACATTAGTAGGGTGATTGGTGATCTCTGGAACAAGTTAAATGAATCAGAAAAATCAGTTTATCAAGAGCAGGCTGTGAAGGATAAGGAGAGGTACAAAGCAGAAATGGAGGGTTATCGCAAGAACATGAGTACGGGTCAAGTTATATGTGACGCTGTGCCACTCCAGCAACGACTTCCAGAGCCGGATACTGATATGGTGGATCCTGAGGCCGACTCTTATCAAACTCCTGAAGAGAGCAGTTCTGGTGAAAGTGACCATGAAGCCGGTAGAAGTATGGAAAAAGATTTCGATATGGATGCATCACATGGTATAGGAGAATCTAGTTGCTTGGGTTCAGTGAAGTAA
1236
0.428
MASTSCVSKSPLSKKESVPASSYCTYPAPLAKYEEVAENSKIFMFTLEKLHAEMGTKFMIPIIGGKELDLHRLFVEVTSRGGFEKIIRERKWKEVTVVFNFPSTATNASFVLRKYYSSLLFHYEQMYYFKAPGWAPPTTSDALRSQPTMPSPAKNIHSLQPHLGTQSHAFQQSSSNAAELREVMPASSSSSSVIGVIDGKFESGYLVTVTIGSEKLQGVLYQEAPQHTTFLASDPSFSVNNNNLSAPSGVARRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKSLHQGKDRDISRVIGDLWNKLNESEKSVYQEQAVKDKERYKAEMEGYRKNMSTGQVICDAVPLQQRLPEPDTDMVDPEADSYQTPEESSSGESDHEAGRSMEKDFDMDASHGIGESSCLGSVK
411
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Lal24g0246
411
Pfam
HMG (high mobility group) box
269
336
IPR009071
-
Lal24g0246
411
PANTHER
HIGH MOBILITY GROUP B PROTEIN 9
3
400
-
-
Lal24g0246
411
MobiDBLite
consensus disorder prediction
1
20
-
-
Lal24g0246
411
CDD
ARID_HMGB9-like
39
124
IPR045303
GO:0003677
Lal24g0246
411
SMART
ARID_2
34
124
-
-
Lal24g0246
411
MobiDBLite
consensus disorder prediction
377
398
-
-
Lal24g0246
411
ProSiteProfiles
HMG boxes A and B DNA-binding domains profile.
269
336
IPR009071
-
Lal24g0246
411
SMART
hmgende2
268
337
IPR009071
-
Lal24g0246
411
ProSiteProfiles
ARID domain profile.
37
128
IPR001606
GO:0003677
Lal24g0246
411
Pfam
ARID/BRIGHT DNA binding domain
41
124
IPR001606
GO:0003677
Showing 1 to 10 of 21 entries
Previous
1
2
3
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Lal24g0246
Lal-Chr24
1752128
1756282
Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Lal24g0246
1
368
ARID Transcription Factor Family
AT1G04880
57.937
7.42e-131
382
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
ARID
Lal24g0246
ARID
3.2e-18
CL0123
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Lal24g0246
-
-
gmx:100807028
537.724
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Lal13g0301
13
1852252
1856236
Lal24g0246
24
1752128
1756282
LSH
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows