Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0246 ATGGCATCAACATCTTGTGTTAGTAAGAGTCCGCTATCAAAGAAAGAATCAGTACCAGCTTCAAGCTATTGTACATATCCTGCCCCTCTTGCAAAATATGAGGAGGTTGCAGAGAATTCCAAGATCTTCATGTTTACATTGGAGAAGCTCCATGCTGAAATGGGTACCAAGTTCATGATTCCCATTATTGGGGGAAAAGAACTAGATTTGCATCGCCTTTTTGTTGAAGTGACTTCTCGTGGAGGGTTTGAGAAGATAATTAGAGAGAGAAAATGGAAAGAAGTAACTGTAGTTTTCAATTTTCCATCAACAGCTACAAACGCTTCTTTTGTTCTCCGGAAGTATTATAGTTCATTGCTTTTCCATTATGAACAAATGTACTACTTCAAAGCCCCTGGATGGGCCCCTCCTACTACTTCTGATGCTTTGCGGAGTCAACCAACGATGCCATCTCCTGCTAAAAATATTCACTCTTTGCAGCCTCACTTAGGAACTCAATCACATGCCTTTCAGCAGTCAAGTTCTAATGCTGCTGAATTACGTGAAGTAATGCCAGCATCTTCGTCAAGCTCTTCAGTCATTGGAGTCATTGATGGAAAATTCGAAAGTGGTTACCTAGTTACTGTCACGATAGGTTCAGAGAAACTCCAAGGTGTTCTTTACCAAGAAGCTCCACAACACACCACATTTTTGGCATCCGATCCTAGTTTTTCGGTTAATAACAACAATCTCTCTGCTCCATCGGGTGTCGCTCGTCGCCGACGGAGGAAAAAATCCGAAATAAAACGGAGAGATCCCGCTCATCCGAAACCCAACCGAAGTGGTTACAATTTCTTCTTCGCAGAACAACACGCAAGACTAAAATCACTTCACCAAGGGAAAGACAGGGACATTAGTAGGGTGATTGGTGATCTCTGGAACAAGTTAAATGAATCAGAAAAATCAGTTTATCAAGAGCAGGCTGTGAAGGATAAGGAGAGGTACAAAGCAGAAATGGAGGGTTATCGCAAGAACATGAGTACGGGTCAAGTTATATGTGACGCTGTGCCACTCCAGCAACGACTTCCAGAGCCGGATACTGATATGGTGGATCCTGAGGCCGACTCTTATCAAACTCCTGAAGAGAGCAGTTCTGGTGAAAGTGACCATGAAGCCGGTAGAAGTATGGAAAAAGATTTCGATATGGATGCATCACATGGTATAGGAGAATCTAGTTGCTTGGGTTCAGTGAAGTAA 1236 0.428 MASTSCVSKSPLSKKESVPASSYCTYPAPLAKYEEVAENSKIFMFTLEKLHAEMGTKFMIPIIGGKELDLHRLFVEVTSRGGFEKIIRERKWKEVTVVFNFPSTATNASFVLRKYYSSLLFHYEQMYYFKAPGWAPPTTSDALRSQPTMPSPAKNIHSLQPHLGTQSHAFQQSSSNAAELREVMPASSSSSSVIGVIDGKFESGYLVTVTIGSEKLQGVLYQEAPQHTTFLASDPSFSVNNNNLSAPSGVARRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKSLHQGKDRDISRVIGDLWNKLNESEKSVYQEQAVKDKERYKAEMEGYRKNMSTGQVICDAVPLQQRLPEPDTDMVDPEADSYQTPEESSSGESDHEAGRSMEKDFDMDASHGIGESSCLGSVK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0246 411 Pfam HMG (high mobility group) box 269 336 IPR009071 -
Lal24g0246 411 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 400 - -
Lal24g0246 411 MobiDBLite consensus disorder prediction 1 20 - -
Lal24g0246 411 CDD ARID_HMGB9-like 39 124 IPR045303 GO:0003677
Lal24g0246 411 SMART ARID_2 34 124 - -
Lal24g0246 411 MobiDBLite consensus disorder prediction 377 398 - -
Lal24g0246 411 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 269 336 IPR009071 -
Lal24g0246 411 SMART hmgende2 268 337 IPR009071 -
Lal24g0246 411 ProSiteProfiles ARID domain profile. 37 128 IPR001606 GO:0003677
Lal24g0246 411 Pfam ARID/BRIGHT DNA binding domain 41 124 IPR001606 GO:0003677
Lal24g0246 411 Coils Coil 318 338 - -
Lal24g0246 411 Gene3D - 28 132 IPR036431 GO:0003677
Lal24g0246 411 MobiDBLite consensus disorder prediction 354 411 - -
Lal24g0246 411 SUPERFAMILY ARID-like 35 134 IPR036431 GO:0003677
Lal24g0246 411 SMART bright_3 38 129 IPR001606 GO:0003677
Lal24g0246 411 SUPERFAMILY HMG-box 257 341 IPR036910 -
Lal24g0246 411 MobiDBLite consensus disorder prediction 1 21 - -
Lal24g0246 411 CDD HMGB-UBF_HMG-box 269 333 - -
Lal24g0246 411 MobiDBLite consensus disorder prediction 241 275 - -
Lal24g0246 411 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 400 - -
Lal24g0246 411 Gene3D High mobility group box domain 253 345 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0246 Lal-Chr24 1752128 1756282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0246 1 368 ARID Transcription Factor Family AT1G04880 57.937 7.42e-131 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal24g0246 ARID 3.2e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0301 13 1852252 1856236 Lal24g0246 24 1752128 1756282 LSH