Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0241 ATGAATTGTTTAGTGGGTTGTCACTCTCACATGTGGATAGTGACCATTGTGTTCTACACATGCATTTTGATTCCATTGATGCAACTGAAGAGGTTACTTTCAAGCATGTTTTGTGTTTATGATATGAAAGGTGTATCCAAAGAGATTGAGTTTCCTCAAATTCCATCACTACCTGTGGCAAGGTTTGAAGATTTGAGAGAGACAGAAGAGATTTGTTCTATTTGTTTGGTTGATTTTGAAGGAGAAGATGCAGTGAGCAAGATTAAGAGATGTGGACATGTGTTTCATGTTAATTGCATTCAGCAATGGCTTCATCTCACTCAATATTCTTGCCCACTTTGTAGATGCAATCTCACCATGATGAGAGCTGGTGGTTTGTATTAG 384 0.3802 MNCLVGCHSHMWIVTIVFYTCILIPLMQLKRLLSSMFCVYDMKGVSKEIEFPQIPSLPVARFEDLRETEEICSICLVDFEGEDAVSKIKRCGHVFHVNCIQQWLHLTQYSCPLCRCNLTMMRAGGLY 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0241 127 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 118 - -
Lal24g0241 127 SMART ring_2 72 114 IPR001841 -
Lal24g0241 127 SUPERFAMILY RING/U-box 53 121 - -
Lal24g0241 127 ProSiteProfiles Zinc finger RING-type profile. 72 115 IPR001841 -
Lal24g0241 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 120 IPR013083 -
Lal24g0241 127 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 118 - -
Lal24g0241 127 Pfam Ring finger domain 71 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0241 Lal-Chr24 1722782 1723237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0241 9 115 C3H Transcription Factor Family AT4G38140 41.071 6.71e-21 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0241 - - pvu:PHAVU_007G012000g 153.68