Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0237 ATGGCTAACTATTTGATGTTACTTTCTTGTGGAGGTGAATTTGAGACAACCTACTCCAACTCTTCCAACAACAACAACAACCGTGTGTTTGAGTGCAAGACATGTAACAGACAATTTCCTTCATTTCAGGCACTAGGTGGCCACCGTGCTAGCCACAAAAAACAAAGGTTGATGGGAGAAGAAGGAAACCAAATGGGTCATGATGATGATTTACCTCCAAAGCCTAAAACCCATGAATGCTCCATTTGTGGTTTGGAATTTGCATTAGGGCAAGCTTTGGGTGGCCACATGAGGCGTCATAGAGTACCAGTAAACTCATCAAATCGAAACATTCAAAGTTCTACTACAACTGTGACTAATAGTAATGGTGGTCATGGTAGCAGTAATGTTGATAATAGCAAGAAGCTTTTGTTTTTGGATTTGAATTTAACTCCACTAGAGAATGATGTAGAGATTTTGAAGACTGGACATACAATTCCTTTAGTGGATTGTTATAATTAA 501 0.3892 MANYLMLLSCGGEFETTYSNSSNNNNNRVFECKTCNRQFPSFQALGGHRASHKKQRLMGEEGNQMGHDDDLPPKPKTHECSICGLEFALGQALGGHMRRHRVPVNSSNRNIQSSTTTVTNSNGGHGSSNVDNSKKLLFLDLNLTPLENDVEILKTGHTIPLVDCYN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0237 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Lal24g0237 166 Pfam C2H2-type zinc finger 29 55 - -
Lal24g0237 166 Pfam C2H2-type zinc finger 78 101 - -
Lal24g0237 166 PANTHER ZINC FINGER PROTEIN ZAT12 1 153 - -
Lal24g0237 166 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lal24g0237 166 SUPERFAMILY beta-beta-alpha zinc fingers 28 100 IPR036236 -
Lal24g0237 166 MobiDBLite consensus disorder prediction 106 129 - -
Lal24g0237 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Lal24g0237 166 SMART c2h2final6 30 52 IPR013087 -
Lal24g0237 166 SMART c2h2final6 78 100 IPR013087 -
Lal24g0237 166 MobiDBLite consensus disorder prediction 53 73 - -
Lal24g0237 166 Gene3D Classic Zinc Finger 27 100 - -
Lal24g0237 166 MobiDBLite consensus disorder prediction 45 73 - -
Lal24g0237 166 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Lal24g0237 166 PANTHER ZINC FINGER PROTEIN ZAT5 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0237 Lal-Chr24 1703725 1704225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0237 1 159 C2H2 Transcription Factor Family AT2G28710 46.914 5.44e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0237 zf-C2H2_6 5.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0237 - - gmx:100500371 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0317 12 2222814 2223320 Lal24g0237 24 1703725 1704225 LSH
Lal13g0294 13 1816778 1817314 Lal24g0237 24 1703725 1704225 LSH