Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0227 ATGGCATCGGTGTTACCATACGGTGATGTTGATTCCAGCTTGAGGGCAATGGCCGGTCGCGCCGAGGGTTTCGGCTACCTCGCCATCGGTGGCCTCAACGGTCATGTCTATTCCGTCACCACCCTTTCTGATGATGGTCCTGGGTCTCTTCGCCAAGGGTGTCGTACAAAGGAGCCTCTATGGATTGTTTTTGCAGTTTCAGGCACAATTCATCTTTCATCATACCTGAGTGTGTCATCTTATAAGACCATAGATGGCAGAGGCCAGAGGATAAAGCTGACTGGAAAAGGCTTGAGGTTGAAAGAATGTGAGCACATAATTATATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATCAAACCCAATTCTAGGCATATATGGATAGATCGATGCAGCCTTCGTGATTACGATGATGGACTGATAGACATTACAAGACAAAGCACGGATATTACAGTATCTAGGTGTTACTTTGCACAGCATGACAAGACCATGCTGATTGGAGCTGATCCATCTCATGTTGGTGATAGATGCATCCGGGTGACTATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGTGTGAGGTTTGGAAAAGTCCATCTATACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAAATATACTCTCAATGCAACATATATGAAGCAGGAACTAAGAAAAAGACTTTTGAATTTTACACTGAGAAGGCTGCAGATAAGGAAGAGCAAAAATCTGGCTTTATAATATCTGAAGGAGACATGTTCCTGAATGGTGCTCTACGTTGCCCACCTATAGAATACAAGGAAGAATCAATGTTCCACCCTAGTGAATATTACCCAACTTGGACCCTGGAAACAGCTGCAGATTCTTTCAGGGAAATCCTCCAATTATGTACGGGTTGGCAATCCATTTCTAGGCCAGTAGACCATATTCAATAA 993 0.4381 MASVLPYGDVDSSLRAMAGRAEGFGYLAIGGLNGHVYSVTTLSDDGPGSLRQGCRTKEPLWIVFAVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADKEEQKSGFIISEGDMFLNGALRCPPIEYKEESMFHPSEYYPTWTLETAADSFREILQLCTGWQSISRPVDHIQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0227 330 SMART amb_all 32 245 IPR002022 -
Lal24g0227 330 PANTHER PECTATE LYASE 18-RELATED 3 326 IPR045032 GO:0030570
Lal24g0227 330 Pfam Pectate lyase 76 238 IPR002022 -
Lal24g0227 330 Gene3D - 7 311 IPR012334 -
Lal24g0227 330 PANTHER PECTATE LYASE 3 326 - -
Lal24g0227 330 SUPERFAMILY Pectin lyase-like 18 283 IPR011050 -
Lal24g0227 330 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Lal24g0227 330 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Lal24g0227 330 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0227 Lal-Chr24 1656709 1661433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0227 44 328 Polysaccharide Lyase AT3G55140 82.807 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0227 K01728 - gmx:100802068 603.208