Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0210 ATGTCGGAAGCTCCACCCGTTTCTGCGTCAACCCCCGAAACGTCGCCGTATTGGTGCTACCATTGCGAGAAACGCGTCTCCACCGAAACCCTCCCCAACCTCTCCGATCTCATATGCGCCGATTGCAAAAACGGCTTCGTTGAACAAATTCCTCTCCTTAATCCATCTCCATCTCCTCCTTCTTCCGATTCCGATCATTCTCAGTTTGCTTCCAACTTTCTCCATGTTCTTCGCCTCATTGCTCAATCCGCGCGTGATCACGACGCTCCTCCCCCTCCTCCTCCTCCTTCTCGCTCTCCTGGTGACGATTTCCTCAGGATCGAGCTAGGTGGCTGGAACGATGATGAAGAAGAAGGCGATGACGATGACGATGGCGATGGCGATGACGATAATGATGATGGAGAAGAAGAAGAAGAAGAAGACCAGGATCGAAACAGCAATATGGATCTTCCTGGAGGTGATGAAGATCTGAGGAGGAGCAGGAGGAGGCGAGAGGTTCTTCGTCTTCGAATTAGGGATTTGGCGATGCGAACAAGGAGCATGAGGAATCGGATCTTGGATTGGTCTGATATTCTGTCTGGTTTGGATGATAATTCGATCCAGTTTCGTCTTCAGGTACCGGAATCTGATCGATACGTCGGGAATCCAGAGGATTACGTCGACGCGGCTGAGTACGAGGCATTGCTGCAGACACTGGCGGAGACAGATGGTGGCGGGAAGAAGGGAGCACCACCAGCGGCGAAGTCCGTGGTGGAGGCATTGCCGACGGTGGAGATCGTGTCGGAGAAGGAGGTTGTGGCGTGTGCTATTTGTAAGGATATGGTTGGTGTTGGTGATCTGGCGAAGAGATTGCCGTGTGGGCATCAGTACCATGGAGATTGCATTGTTCCTTGGTTGGGTTCTAGAAATTCATGCCCTATTTGTAGGTTTGAGCTTCCAACTGAAGATAAGGAATATGAACAACAGAGGAAGAATAAGAAGGTGATGAATACTTCTTCAAATGGAGCTTCCGGTTCGGGTGGTGGATCAGGTTGA 1035 0.5092 MSEAPPVSASTPETSPYWCYHCEKRVSTETLPNLSDLICADCKNGFVEQIPLLNPSPSPPSSDSDHSQFASNFLHVLRLIAQSARDHDAPPPPPPPSRSPGDDFLRIELGGWNDDEEEGDDDDDGDGDDDNDDGEEEEEEDQDRNSNMDLPGGDEDLRRSRRRREVLRLRIRDLAMRTRSMRNRILDWSDILSGLDDNSIQFRLQVPESDRYVGNPEDYVDAAEYEALLQTLAETDGGGKKGAPPAAKSVVEALPTVEIVSEKEVVACAICKDMVGVGDLAKRLPCGHQYHGDCIVPWLGSRNSCPICRFELPTEDKEYEQQRKNKKVMNTSSNGASGSGGGSG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0210 344 Pfam Ring finger domain 268 309 IPR001841 -
Lal24g0210 344 SMART ring_2 268 308 IPR001841 -
Lal24g0210 344 SUPERFAMILY RING/U-box 263 315 - -
Lal24g0210 344 MobiDBLite consensus disorder prediction 85 158 - -
Lal24g0210 344 MobiDBLite consensus disorder prediction 326 344 - -
Lal24g0210 344 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 32 342 - -
Lal24g0210 344 MobiDBLite consensus disorder prediction 319 344 - -
Lal24g0210 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 315 IPR013083 -
Lal24g0210 344 Pfam zinc-ribbon 16 50 IPR039525 GO:0061630
Lal24g0210 344 ProSiteProfiles Zinc finger RING-type profile. 268 309 IPR001841 -
Lal24g0210 344 MobiDBLite consensus disorder prediction 113 144 - -
Lal24g0210 344 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 32 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0210 Lal-Chr24 1526126 1527160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0210 105 325 C3H Transcription Factor Family AT5G01980 35.965 2.25e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0210 - - lang:109346529 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0295 12 2075535 2076482 Lal24g0210 24 1526126 1527160 LSH