Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0208 ATGTTATCACAGTTGATGAACTTTTTGAGGGCCTGCTTTCGGCCAAATTCGGTTGGTTACACATGCACAGGTTCGGATGCTAGAGGTAGACAAGATGGACTATTATGGTACAAAGACTCAGGACAGCACTTTCATGGTGAATTTTCAATGGCTGTGGTTCAAGCCAATAACCTGCTGGAGGATCAGAGCCAGGTTGAATCTGGCACTTTGAGTTCCAATGAATTTGGCCCTCATGGTACCTTTGTTGGTGTCTATGATGGGCATGGAGGGCCGGAAACATCGCGGTTTATCAATGATCAGCTATTTCACCATCTCAAGAGATTTACTTCAGAGCAACAATCAATGTCAACGGAAGTAATTCGGAAGGCATTTCAAGCAACAGAAGACGGGTTTATGTCACTCGTTGCCAGACAATGGTCAGTGAAGCCACAAATTGCAGCTGTTGGATCGTGCTGTCTTGTTAGTGTTATTTGTAATGGAACACTTTACGTAGCAAATGCTGGTGATTCTCGGGCTGTTTTAGGAAGCGTAGTCAAGGCAACTGGTGAGGTTTTAGCCACCCAATTATCAACAGAACATAATGCATCAATAGAGTCTGTAAGACAGGAGCTGCATTCTTTGCACCCTGATGATCCAAATGTCGTTGTTTTAAAGCATAACGTATGGCGTGTGAAGGGCATTATTCAAATTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCTGAATTCAATAGAGAACCGCTTTACACTAAGTTTCGAGTTCGTGAGCCGTTCAAGAGGCCAATACTTAGCTCAGAACCATCAATAACAGTGCATCAGTTGCAGCCACATGATCAATTTATTATATTAGCATCTGATGGGCTCTGGGAGCACCTCAGCAATCGAGAAGCAGTTGATATAGTTGCAAACAATTCCCGCAATGGAAGTGCAAGGAGGCTGGTGAAAGTTGCACTTCAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCAGACTTGAAGAAAATTGACCGTGGAGTTCGTCGACATTTCCACGATGACATCACTGTAATTGTTGTGTATCTTGACTCGAATCTCATGAATAGGGCAAGCACTGTGAAGTTCCCTAGTATTTCTGTTAGAGGGGGTGGTATTCACTTGCCTTCTAACACACTGGCACCTTGTACAACGCCAACAGAGATCGGCGGTACCTGA 1194 0.4338 MLSQLMNFLRACFRPNSVGYTCTGSDARGRQDGLLWYKDSGQHFHGEFSMAVVQANNLLEDQSQVESGTLSSNEFGPHGTFVGVYDGHGGPETSRFINDQLFHHLKRFTSEQQSMSTEVIRKAFQATEDGFMSLVARQWSVKPQIAAVGSCCLVSVICNGTLYVANAGDSRAVLGSVVKATGEVLATQLSTEHNASIESVRQELHSLHPDDPNVVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYTKFRVREPFKRPILSSEPSITVHQLQPHDQFIILASDGLWEHLSNREAVDIVANNSRNGSARRLVKVALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVYLDSNLMNRASTVKFPSISVRGGGIHLPSNTLAPCTTPTEIGGT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0208 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Lal24g0208 397 Gene3D - 37 365 IPR036457 -
Lal24g0208 397 SMART PP2C_4 39 353 IPR001932 -
Lal24g0208 397 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 387 - -
Lal24g0208 397 Pfam Protein phosphatase 2C 77 324 IPR001932 -
Lal24g0208 397 ProSiteProfiles PPM-type phosphatase domain profile. 44 355 IPR001932 -
Lal24g0208 397 CDD PP2Cc 48 355 IPR001932 -
Lal24g0208 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Lal24g0208 397 PANTHER ALPHABET, ISOFORM E-RELATED 5 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0208 Lal-Chr24 1512277 1516702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0208 1 393 PP2C-type Phosphatase Gene Family AT4G38520 75.573 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0208 - K01102 gmx:100790374 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0208 24 1512277 1516702 Lal24g0208 24 1512277 1516702 ECH
Lal12g0270 12 1934135 1939499 Lal24g0208 24 1512277 1516702 LSH
Lal13g1133 13 8648999 8652888 Lal24g0208 24 1512277 1516702 LSH
Lal1g1837 1 20658654 20661592 Lal24g0208 24 1512277 1516702 PCT
Lal24g0208 24 1512277 1516702 Lal1g1837 1 20658654 20661592 PCT