Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0204 ATGGGTGTGGCTCAGAACAATATCGATGTGGAGGATGGTAACTTGGAGATTGGAATGGAATATAGAACTGTATCAGGAGTTGCTGGACCATTGGTCATTCTTGACAAAGTCAAGGGACCTAAATATCAAGAGATTGTTAATATTCGTTTAGGAGATGGAAGTACTCGACGTGGACAAGTTCTAGAGGTTGATGGCGAAAGGGCCGTTGTTCAGGTCTTTGAAGGTACTTCTGGGATTGACAATAAATTTACAACCGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTTTCTCTGGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCAATTGACAATGGAAGTTCCATCAACCCTAGTGAGAGAACTTATCCTGAGGAAATGATACAGACAGGGATATCTACAATTGATGTTATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTACCCCATAATGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGCGATTAGAAAAGTCTGATAATCTTCTTGAGGGTGGTGAAGGGGACAATTTTGCCATTGTATTTGCAGCTATGGGAGTTAACATGGAGACCGCACAGTTTTTTAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCTAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAACATGTTCTTGTGATCCTCACAGATATGAGTTCTTACGCTGATGCTCTTCGTGAGGTGTCTGCTGCCCGAGAAGAAGTACCAGGAAGACGTGGTTATCCTGGTTACATGTATACAGATCTTGCAACAATTTATGAACGTGCAGGAAGAATTGAAGGGCGAACAGGCTCTATTACACAAATTCCGATTCTAACCATGCCCAATGATGATATTACGCATCCGACTCCTGATCTTACTGGATATATCACCGAGGGTCAGATATACATTGACAGGCAACTGCATAATAGACAGATATATCCACCAATCAATGTCCTTCCATCTTTATCTCGGTTGATGAAGAGTGCTATCGGTGAGGGAATGACTAGAAAGGATCACGCTGATGTGTCCAATCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAGGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGATCTGTTGTATCTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTCGCCCAGGGAGCTTATGACACCCGCAATATTTTCCAGTCTCTAGATCTTGCATGGACTTTACTTCGGATCTTCCCTCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACGCATATTACAGCCGAGGTGCCAGTAACTAA 1428 0.4265 MGVAQNNIDVEDGNLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGERAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEGDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRTGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAYYSRGASN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0204 475 PIRSF V-ATPsynth_beta/V-ATPase_B 11 475 IPR022879 -
Lal24g0204 475 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 474 - -
Lal24g0204 475 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Lal24g0204 475 ProSitePatterns ATP synthase alpha and beta subunits signature. 355 364 IPR020003 GO:0005524
Lal24g0204 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 370 IPR027417 -
Lal24g0204 475 CDD ATP-synt_V_A-type_beta_C 374 468 - -
Lal24g0204 475 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 473 IPR005723 GO:0033180|GO:0046961|GO:1902600
Lal24g0204 475 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 474 IPR022879 -
Lal24g0204 475 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 134 364 IPR000194 GO:0005524
Lal24g0204 475 Gene3D - 29 474 - -
Lal24g0204 475 CDD V_A-ATPase_B 92 366 - -
Lal24g0204 475 Hamap V-type ATP synthase beta chain [atpB]. 18 473 IPR022879 -
Lal24g0204 475 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0204 Lal-Chr24 1492336 1498792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0204 1 475 Primary Pumps ATPases(2) AT4G38510 92.828 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0204 K02147 - pop:7474990 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0204 24 1492336 1498792 Lal24g0204 24 1492336 1498792 ECH
Lal12g0271 12 1940520 1946174 Lal24g0204 24 1492336 1498792 LSH
Lal13g0245 13 1546725 1552303 Lal24g0204 24 1492336 1498792 LSH