Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0195 ATGGCGGCATCATCTTCATCAGTATCACTCTTTGGATTTAGAGAAGTAGACCAGAATCAGAATCAGATGAATCAACAGCATTCATCTTCAGCAACTCTAGCTGCACCACCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCTGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTACCTTGGAAGCTTAAACAGAAGACTACAAAAGAGCAAAGGAGAAAGGTTTATCTGTGTCCTGAGCCCACTTGCATTCACCATGATCCTTCAAGGGCTCTTGGTGACCTCACTGGGATTAAGAAGCACTACTATCGCAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGTTCTAAGAAGTATGCTGTGCAATCTGATTGGAAAGCTCATTCTAAGATTTGTGGTACTAGAGAATATAGATGTGATTGTGGTACTATCTTCTCCAGAAGGGACAGTTTCATAACCCACAGGGCCTTCTGTGATGCACTAGCTCAAGAGACTGAAATGCAGCCACCAAATGTGAGCAGTGCCAACCATCCCTACGGAACTCATAATAGCAACATGGCCTTAGCCTTATCTCAAGTGCTTCCACAAATGTCCAACATTCAAGACCAGATCAATAATGTCCATCCAACTGAACAATTTAACCATATCCATCATTCATCCTTGCAAGATGGTTCATCATCTTTTAAGCCTTCACTACAAACTATGCATCACTCTCCACCTTCATTCTTCATGGCTGCTGATAATTCAAACCAAAACTACAACCACCCTGACCAGTCTAGACAACAACAACAACAACAACAAAAAGGGTTGGTGCAACAAAATAAAGTACCATTATTTCAGGGACTAATGCATTTGTCTCACAATTCTCCACCACCTTGTGCTGGATCACCCAACCTCTTCAACCATCCCTTCCTTTCAATTAATAGCAGCAGCAACAACTCCTTCTCTGAACTTTTCAACAGTGCCAATGGAAGCGTTGGAGGAGGCAGTGAAGCAACCAACTTCTTCACTACAGGAATTTCTACAATGGGTGGTCATCATCATCAACAAATAATAACTTCAAGTGCACCTTCTCTATTCAGCACATCTCTCCAAGGCAACAATAGTGCTGTCAATACTCATCATCATCATCATATGTCAGCAACTGCACTGCTACAGAAAGTTGCTGAAATGAGTAGTGCAACTTCCAGCAACAGCACCACCTCACTTCTAAAAAGCTTCGGAAGCATCATTTCCTCTAGCAGCGGATCCAAAACTGATCATAATATTCCACTTCATGTTCCTTCTCATCCTGCAATCTATAGCAGCATATTCAGTGGAAATGAAAACAACAATAACTTGCAAGAGCTAATGAACACATTTGCAGGAAGTCAAAACACTTCAATATTGGAAGATGATGTTTCATTAGGGCTTACTAGGTTTGAACCATATGATGATAAATCAAACAGAAGGAAACAACCAAGAGTGGATGGAGTGAATATTGGTGGCTCAGATGATAAGCTAACTCGTGATTTTCTTGGTGTTGGTGAAATAGTGAGAAGCATCAGTGGTGGAAATGGAGGGGTTGTTTCAGAAAGAGAGGAACATGGACATGGTGGAAGTGGAGGGAATTTTCAGTGA 1722 0.4181 MAASSSSVSLFGFREVDQNQNQMNQQHSSSATLAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEQRRKVYLCPEPTCIHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTIFSRRDSFITHRAFCDALAQETEMQPPNVSSANHPYGTHNSNMALALSQVLPQMSNIQDQINNVHPTEQFNHIHHSSLQDGSSSFKPSLQTMHHSPPSFFMAADNSNQNYNHPDQSRQQQQQQQKGLVQQNKVPLFQGLMHLSHNSPPPCAGSPNLFNHPFLSINSSSNNSFSELFNSANGSVGGGSEATNFFTTGISTMGGHHHQQIITSSAPSLFSTSLQGNNSAVNTHHHHHMSATALLQKVAEMSSATSSNSTTSLLKSFGSIISSSSGSKTDHNIPLHVPSHPAIYSSIFSGNENNNNLQELMNTFAGSQNTSILEDDVSLGLTRFEPYDDKSNRRKQPRVDGVNIGGSDDKLTRDFLGVGEIVRSISGGNGGVVSEREEHGHGGSGGNFQ 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0195 573 MobiDBLite consensus disorder prediction 511 530 - -
Lal24g0195 573 MobiDBLite consensus disorder prediction 1 52 - -
Lal24g0195 573 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lal24g0195 573 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Lal24g0195 573 MobiDBLite consensus disorder prediction 253 305 - -
Lal24g0195 573 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 552 - -
Lal24g0195 573 MobiDBLite consensus disorder prediction 1 45 - -
Lal24g0195 573 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Lal24g0195 573 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 552 - -
Lal24g0195 573 SMART c2h2final6 68 90 IPR013087 -
Lal24g0195 573 SMART c2h2final6 144 164 IPR013087 -
Lal24g0195 573 SMART c2h2final6 109 139 IPR013087 -
Lal24g0195 573 MobiDBLite consensus disorder prediction 551 573 - -
Lal24g0195 573 Gene3D Classic Zinc Finger 47 116 - -
Lal24g0195 573 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Lal24g0195 573 Gene3D Classic Zinc Finger 122 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0195 Lal-Chr24 1402306 1406816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0195 38 554 IDZ Gene Family AT2G02070 46.354 1.48e-131 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0195 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0195 K25870 - gmx:100786121 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0258 12 1833512 1840772 Lal24g0195 24 1402306 1406816 LSH
Lal13g0226 13 1431987 1438100 Lal24g0195 24 1402306 1406816 LSH