Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0192 ATGATTTTGGAAATAACACTGATCAGAGAAAAGATGAAGTTTTGCAAGACTTATCAGGAATACATGGAAGGGCAACAATATAACCTTCCTGGGCTTGGATTCAAAAACCTTAAAAAGATTATGAAGACTTGCAGGAGAGACTTCCAATCCCATAATACTCTCACTCCCATCAAATCCTGCCATGATCAATGCCCAGTGTGCGACGGAACATTCTTCCCTTCTCTTCTCAACGAAATGTCAGATGTATTAGGTTGCTTTAATCACCGTGCACAAAAATTGCTGGAGCTACATCTTGCTTCTGGCTTCAGAAAGTATTTTTTCTGGTTGAAAAGAAAATTACAAAGGGATCATACTGTTCTAGTTCAAGAAGGCAGAGATTTAGTCACTTATGCACTGATAAATGCCATTGCAATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAAGTACAGACTATGCACAAGGAAATTCTTCAAAGTCCATGGCTTATTGAGCTTATGGCCTTGTACCTCAACTTAAGGAGAACTAATTTGGAGTCAATGAAGGCACCTGCTTTGTTTGATGGCTGCTCCCTCACATTTAAGGATGGAAAGCCATCACTTACTTGTGAGCTCTTTGATTCCATCAAAATTGATATAGACCTGACTTGCTCTCTATGCTTGGACACAGTATTTGATCCAGTTTCTCTGACGTGCGGACATATATTCTGCTACAGTTGTGCTTGCTTAGCTGCATCCACAAGTATTGTTGATGGACTTAAGGCAGCAGATCCTAAAGAGAAATGTCCTCTATGCCGAGAGGAAGGAGTTTATGAAGGTGCTGTGCGCTTGGAAGAGTTAAATATTCTGTTAGCCCGAAACTGCCATGAGTACTGGGAGCAGCGTCTTCGGACAGAGAGGGTAGAGAGGATCAATCAAGCTAAGGAACACTGGGAATCACAATGTAGGGCGTTCATGGGTGTTTAA 999 0.4064 MILEITLIREKMKFCKTYQEYMEGQQYNLPGLGFKNLKKIMKTCRRDFQSHNTLTPIKSCHDQCPVCDGTFFPSLLNEMSDVLGCFNHRAQKLLELHLASGFRKYFFWLKRKLQRDHTVLVQEGRDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQTMHKEILQSPWLIELMALYLNLRRTNLESMKAPALFDGCSLTFKDGKPSLTCELFDSIKIDIDLTCSLCLDTVFDPVSLTCGHIFCYSCACLAASTSIVDGLKAADPKEKCPLCREEGVYEGAVRLEELNILLARNCHEYWEQRLRTERVERINQAKEHWESQCRAFMGV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0192 332 CDD SPX_BAH1-like 13 155 - -
Lal24g0192 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 330 IPR013083 -
Lal24g0192 332 ProSiteProfiles SPX domain profile. 12 159 IPR004331 -
Lal24g0192 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 12 332 IPR033326 -
Lal24g0192 332 ProSiteProfiles Zinc finger RING-type profile. 228 277 IPR001841 -
Lal24g0192 332 ProSitePatterns Zinc finger RING-type signature. 243 252 IPR017907 -
Lal24g0192 332 SUPERFAMILY RING/U-box 221 279 - -
Lal24g0192 332 SMART ring_2 228 276 IPR001841 -
Lal24g0192 332 Pfam Zinc finger, C3HC4 type (RING finger) 225 279 - -
Lal24g0192 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 12 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0192 Lal-Chr24 1384317 1387178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0192 225 279 C3H Transcription Factor Family AT4G28270 38.333 3.63e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0192 K16275 - gmx:100797432 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0192 24 1384317 1387178 Lal24g0192 24 1384317 1387178 ECH