Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0174 ATGACCCTTCTTTTCTTCTACCTTCTTATTTTCTTCACTCTCTTCTTTTCTTCATTCTCCTTAAACACCACATGCCCTCTTAACTTCACCATCCTCACCACCCTCAGCGGTGGCGCCAGGCCTTCTTCCTTCGACTCCACCACCGGCTGCCAGTTCATCCGTCAAGCCTTCCGCCTTGTACAATCTGACTATCTCCGCCGCACCACCTTCTTCCTACCACCTTTCAACTCTTCAGAATCATGTTGGCAAAGTTTCCAATCATATACCAATTCCTTCGACTCCACTTTCAATATTCGATCCTCTTGTGGCTTTGAAACAAGTTACATATCTCAAGGTTGCATTAACATAACTACTAAACATGATTTTGAAGCCTTGGTTACAAAGTCTGTGCTTCAAGATGTTGATAGAAACTGTAACCAATCACTTGAGAATAATTCTCCTTGTGCCCTTTGTACTACTAGTGTTTCAAGTTTACCAGTTTCTGGTACTTCCATTGGGAACCTTTCTGATTGCACTGCTTATCCTTTTATTTATGTTGCTGCTTTCTCTAACCAATTTGGACCATCTGACCCTGGTACTGTTAAATGTTTGTTCTCCCTTGATTTTTCATCTCAGGGTTCCTCTGGTGGTAGGAAAAAAGTTGTTGTTGTTGTTCTTGTTTCCGCTCTTGCTGTCTTTGTTTTGGTTCTCTTAGTTGTTGGGTTTTTTGGGTATTGGAAGTTGAGAAGGAAGAGTAAAGGTGGAAATATTGCAGAGATGGATTTGGTTTCTGGGTTGGATTCAATGGATCAAAGTACTACTTTGATTAGGTTTACTATTGATGATGTTAAGAAAGCAACTAAATTTTTTCATAGGGATAGTATTATTGGAAGAGGGGGTTATGGTAATGTGTATAGAGGGGTGATTTCTGATGGGAGTGAGGTTGCATTGAAGAGGTTCAAGAATTGTTCTGCTGCTGGTGATGCAAGCTTCACTCATGAAGTTGAGGTCATTGCGAGTATTAGGCATGTCAACCTTGTTGCATTGAGAGGTTATTGTTCTGCAACAACTAAATATGAAGGTTACCAGAGGATTATTGTTACTGATTTGATGAAAAATGGGAGCCTTCATGATCATTTGTTTGGTTCTATGGGGATCAAACTCAGTTGGCCGACTCGTCAACAGATTGCGCTAGGTACCGCGAGGGGGTTGGCTTATTTACATTATGGTGCCCAGCCTTCCATTATCCACAGGGATATTAAAGCTAGTAATATACTTTTGGATGATAAGTTTGAAGCTAAAGTTGCAGATTTTGGATTGGCAAAGTTCAATCCTGAAGGAATGACTCATATGAGCACAAGGGTAGCTGGAACAATGGGATATGTTGCTCCTGAGTATGCTTTATATGGACAATTGACAGAGAGAAGTGATGTTTTTAGTTATGGTGTTGTGCTTCTTGAGCTTTTGAGTGGAAGGAAGGCTCTTCAAACAGATAATGATGGCCAACCCTCAGCATTGACTGATTGGGCTTGGTCATTGGTTCGAGCGGGTAGAGCTTTGGATGTGATTGAAGATGGCATGTCAGAACCTGGTTCACAACAAGTTCTTGAGAAGTATGTGTTAATTGCTGTACTTTGCTCTCATCCGCAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAAACAGATGATGAATCGGTGCCTTCGATACCAGAACGGCCAATCCCTTTTGTTGCTCGGAGGCTTGATATTGAGAGAACTCTGAGCACCAGTGGCTCCGGTCAGCTCTCTAGTCCAACCGGATATCAAACATATACATTGGAAAGTGACCCATTCTTCAAATTCTAA 1839 0.4154 MTLLFFYLLIFFTLFFSSFSLNTTCPLNFTILTTLSGGARPSSFDSTTGCQFIRQAFRLVQSDYLRRTTFFLPPFNSSESCWQSFQSYTNSFDSTFNIRSSCGFETSYISQGCINITTKHDFEALVTKSVLQDVDRNCNQSLENNSPCALCTTSVSSLPVSGTSIGNLSDCTAYPFIYVAAFSNQFGPSDPGTVKCLFSLDFSSQGSSGGRKKVVVVVLVSALAVFVLVLLVVGFFGYWKLRRKSKGGNIAEMDLVSGLDSMDQSTTLIRFTIDDVKKATKFFHRDSIIGRGGYGNVYRGVISDGSEVALKRFKNCSAAGDASFTHEVEVIASIRHVNLVALRGYCSATTKYEGYQRIIVTDLMKNGSLHDHLFGSMGIKLSWPTRQQIALGTARGLAYLHYGAQPSIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGRKALQTDNDGQPSALTDWAWSLVRAGRALDVIEDGMSEPGSQQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDDESVPSIPERPIPFVARRLDIERTLSTSGSGQLSSPTGYQTYTLESDPFFKF 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0174 612 ProSiteProfiles Protein kinase domain profile. 283 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0174 612 Gene3D Phosphorylase Kinase; domain 1 251 362 - -
Lal24g0174 612 SUPERFAMILY Protein kinase-like (PK-like) 265 580 IPR011009 -
Lal24g0174 612 Pfam Protein kinase domain 283 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0174 612 PANTHER OS01G0253100 PROTEIN 16 608 IPR045271 GO:0004714|GO:0006468
Lal24g0174 612 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Lal24g0174 612 Gene3D Transferase(Phosphotransferase) domain 1 364 566 - -
Lal24g0174 612 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 16 608 - -
Lal24g0174 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Lal24g0174 612 CDD STKc_IRAK 289 558 - -
Lal24g0174 612 Pfam SPARK 22 160 IPR043891 -
Lal24g0174 612 SMART serkin_6 283 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0174 Lal-Chr24 1269419 1271653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0174 3 607 Receptor kinase-like Gene Family AT2G48010 61.201 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lal24g0174 Pkinase 5.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0174 - - gmx:100800760 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0174 24 1269419 1271653 Lal24g0174 24 1269419 1271653 ECH
Lal24g0174 24 1269419 1271653 Lal1g1940 1 21524105 21526959 ECH
Lal12g0230 12 1627133 1629025 Lal24g0174 24 1269419 1271653 LSH
Lal1g1940 1 21524105 21526959 Lal24g0174 24 1269419 1271653 PCT
Lal24g0174 24 1269419 1271653 Lal1g1940 1 21524105 21526959 PCT