Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0144 ATGTTCCCTGCAACTATGTCCAATTCCACTCCTTTATCAGAAGAAGCCAGTGTACTCTCTTCTGGTGCAAGAATTCATGAGGACTTAGTCTCAACCATTTCTCCTCAGAACCAGCCTCAACAAAATATCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGACCCAGATGCAGAAGTAATTGCCTTATCTCCAAAGACTCTTCTAGCTACAAATAGGTTTGTGTGTGAGATCTGCAAAAAGGGTTTCCAAAGGGATCAGAATCTTCAGCTTCATAGGAGAGGCCATAACTTGCCTTGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTTAAAAAGAGAGCCTATGTTTGTCCTGAGCCTTCATGTGTTCACCACAACCCCTCAAGGGCTCTTGGAGATCTTACAGGTATTAAGAAACACTATTGCAGAAAACATGGAGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACATGTGGTACTAGAGAGTATAAATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAATCAAATAGCCAACAACTCCACAAACCCATTAGCCCAATCTCTCTTCCTTTTCCCAACTACCCAACAAAACAATTTCCAAAATCATTTCACCACTACCACCACCCTCAATCCCAGCTGGGACTCTTCACACCAAAACCCTAACCCTAGCAACTTTGCTACTACCCTCCACAACAGTATCAAACCTGAAGCTCAAACCTTTCATATCCCCAACAACAATAGCAACCCTTCATTTCTTCAGCACCACAAGGGCATGATAACATCCTCACCTTTCAGAAACCTCCAAGTGTGCACACAAAACTCTTCAAACTCTGCTACATCAGCATATCTCTCAGCCACTGCGCTGCTTCAGAAGGCAGCGACCGTCGGTGCCGCTGCCATAACATGCCCTAATGCTTCCATTAGCATTGGCCAACAACAACACGTTACTCATCTCAGCATGGGCGAGTTTGGAACAGTGACGACTCAGCTCAACAACTCAGTGGTATCTGATCCTAATCACTACAACATGAAGGGGCTAAACAAGAACGAGACAAGGGACTTTCTGGGGCTTACTAACGGCGGAGATGGATGCAACAGAGGAAATGCTGTTGAAGTTAGCATGAACATGAAGGATATGCTAACGTTCACGGAAAGTGTAGATTACCAGAACCAACCTTACGAGAACCATCACCATCAGCACTCACAGTTCAAGTACCAACAGCAAGGTTTTGGATTCGTTGGGACAACCACTGCCCCTGAGTCATGGGGGAATTGTTGA 1386 0.4459 MFPATMSNSTPLSEEASVLSSGARIHEDLVSTISPQNQPQQNIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQIANNSTNPLAQSLFLFPTTQQNNFQNHFTTTTTLNPSWDSSHQNPNPSNFATTLHNSIKPEAQTFHIPNNNSNPSFLQHHKGMITSSPFRNLQVCTQNSSNSATSAYLSATALLQKAATVGAAAITCPNASISIGQQQHVTHLSMGEFGTVTTQLNNSVVSDPNHYNMKGLNKNETRDFLGLTNGGDGCNRGNAVEVSMNMKDMLTFTESVDYQNQPYENHHHQHSQFKYQQQGFGFVGTTTAPESWGNC 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0144 461 Gene3D Classic Zinc Finger 107 197 - -
Lal24g0144 461 SMART c2h2final6 73 95 IPR013087 -
Lal24g0144 461 SMART c2h2final6 149 169 IPR013087 -
Lal24g0144 461 SMART c2h2final6 114 144 IPR013087 -
Lal24g0144 461 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Lal24g0144 461 Gene3D Classic Zinc Finger 69 96 - -
Lal24g0144 461 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Lal24g0144 461 MobiDBLite consensus disorder prediction 31 57 - -
Lal24g0144 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 440 - -
Lal24g0144 461 MobiDBLite consensus disorder prediction 31 47 - -
Lal24g0144 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Lal24g0144 461 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 9 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0144 Lal-Chr24 1060902 1064914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0144 44 446 IDZ Gene Family AT4G02670 49.757 4.35e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0144 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0144 K25870 - gmx:100780056 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0192 12 1378330 1382235 Lal24g0144 24 1060902 1064914 LSH