Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0130 ATGGAGATTTCAAAGGCAAATGGCAATGGCAATGGCAATGGCAATAACAACGAGTCATTGAACCTTTGTAATGGTAGCAGTACTAGAAGTCATGAAGATCCACTCAATTGGAACATGGCTGCGGATGCTTTGAAAGGTAGCCACTTTGATCAGGTGAAGCGGATGGTGGAGGAGTACCGGAGGCCAGTGGTGAAGTTAAGTGGTGAGAACCTAACCATATCTCAGGTGGCAGCAGTTTCAGACCACAACAGTGGTGTCACGGTGGAGCTAGAGGAGAAGACACGTGTCGGTGTCAAGGCCAGTAGCCAGTGGATGATAGACAGCTTGAAGAATGGGACAGATTGCTATGGAGTCACAACTGGGTTTGGTTCTAGCTCACACAGAAGAACAGATCAGGGTGGTGCCCTACAAAATGAACTCATAAGATTCTTGAATGCTGGCATTTTTGGCAATGGCACAGAATCCAACCACATCTTATCTCACTCAGCCACAAGAGCATCAATGCTTGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGAATCAGATTTGAAATAATGGAAGCAATGACCAAATTCCTGAACCAAAACATAATTCCATGTCTCCCTCTAAGGGGTACAATCACTGCTTCAGGTGACCTTGTCCCTTTGTCATATGTTGCTGGTCTTTTGATTGGAAGGCCAAACTCAAAGTCTATTGGACCTGATGGAAAAGTTCTTAATGCCAAAGAGGCCTTTGAGCTAGCTGGAATTGAAGGTGGTTTCTTTAAGTTGCTACCTAAAGAAGGTTTGGCATTACTGAATGGCACTGCAGTTGGATCTGGCTTAGCTTCAAAGGTTCTTTTTGATGCAAACATACTTGTTCTCCTCTCAGAAGTGATGTCTGCCATTTTCGCCGAAGTTATGCATGCGAAACTAGAATTCACAGATCACTTGACACATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCAATAATGGAACATATTTTGGATGGAAGTGCCTATTTTAAGGTTACAGATGAGATTTATTCTCTTGAGAAGCCTAAACAAGATAGGTATGCTCTTAGAACTTCACCTCAGTGGCTTGGACCACAGATTGAAGTAATAAGGCATTCAACAAGGATGATTGAGAGGGAGATAAACTCTGTCAATGACAACCCCTTGATTGATGTTTCAAGGAATAAGGCAATTCATGGAGGGAATTTCCAAGGCACCCCTATTGGTGTTTCAATGGATAACACTCGTTTGGCCATTGCTTCAATTGGTAAACTTATGTTTGCTCAATTCTCTGAGCTTGTTAATGACTTCTACAACAATGGTCTTCCTTCAAATCTTACAGCTAGCTCCAACCCAAGCTTGGATTATGGCTTCAAAGGTGCAGAAATTGCAATGGCATCCTACTGCTCAGAACTTCAATACCTTGCCAATCCTGTCACCACTCATGTTCAAAGTGCTGAACAACACAACCAAGATGTGAACTCTTTAGGCCTCATTTCATCAAGAAAGACATATGAAGCAGTGGACATATTGATGCTCATGTCATCAACTTTCCTAATTGCATTGTGCCAAGCCATTGATTTGAGGCACTTGGAGGTTAATGTGAAGAGTTCTGTGAAGAACACTGTGAGTCAGGTTGCAAAGAAGGTCCTCACAACCGATGTCCAAGGTGAGTTGCATCCATCAAGGTTCTGTGAGAAAGACTTGCTCAAAGTTGTTGACAGTGAGCATGTATTTGCTTACATTGATGACCCATGCAATGCAAAATACCCTTTAATGCAGGAGTTGAGAAGGGTACTATTGGATCATGCATTGAATAATAATGGTGATAATGAGGTGAATCCAAGTACCTCAATATTCCAAAAGATAGGAGCTTTTGAGGAAGAGCTGAAGGCCCTTTTGCCTAAGGAAGTGGAAAATGCTAGGATTGAAGTTGAAAATGGAAATCCTGTTATTCCTAACAGGATCAAGGAATGTAGGTCTTATCCACTGTACAAGTTTGTGAGAGAAACTTTGGGTACATCTTTGCTTACAGGTGAGAAAATAAGGTCACCAGGTGAGGAATGTGATAAGGTATTCTCTGCATTGAGTGAAGGGAAGTTGATTGACCCTCTATTGGACTGCCTCAAGGAGTGGAATGGTGAACCTCTCCCACTACATTAG 2169 0.4251 MEISKANGNGNGNGNNNESLNLCNGSSTRSHEDPLNWNMAADALKGSHFDQVKRMVEEYRRPVVKLSGENLTISQVAAVSDHNSGVTVELEEKTRVGVKASSQWMIDSLKNGTDCYGVTTGFGSSSHRRTDQGGALQNELIRFLNAGIFGNGTESNHILSHSATRASMLVRINTLLQGYSGIRFEIMEAMTKFLNQNIIPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGKVLNAKEAFELAGIEGGFFKLLPKEGLALLNGTAVGSGLASKVLFDANILVLLSEVMSAIFAEVMHAKLEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYFKVTDEIYSLEKPKQDRYALRTSPQWLGPQIEVIRHSTRMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASSNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAVDILMLMSSTFLIALCQAIDLRHLEVNVKSSVKNTVSQVAKKVLTTDVQGELHPSRFCEKDLLKVVDSEHVFAYIDDPCNAKYPLMQELRRVLLDHALNNNGDNEVNPSTSIFQKIGAFEEELKALLPKEVENARIEVENGNPVIPNRIKECRSYPLYKFVRETLGTSLLTGEKIRSPGEECDKVFSALSEGKLIDPLLDCLKEWNGEPLPLH 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0130 722 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 206 222 IPR022313 GO:0016841
Lal24g0130 722 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 24 721 - -
Lal24g0130 722 Gene3D - 24 270 IPR024083 -
Lal24g0130 722 PANTHER HISTIDINE AMMONIA-LYASE 24 721 IPR001106 -
Lal24g0130 722 SUPERFAMILY L-aspartase-like 32 721 IPR008948 GO:0003824
Lal24g0130 722 MobiDBLite consensus disorder prediction 1 31 - -
Lal24g0130 722 Gene3D - 534 656 IPR023144 -
Lal24g0130 722 Gene3D Fumarase/aspartase (Central domain) 271 716 - -
Lal24g0130 722 Pfam Aromatic amino acid lyase 71 536 IPR001106 -
Lal24g0130 722 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 33 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lal24g0130 722 CDD PAL-HAL 69 531 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0130 Lal-Chr24 943984 948590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0130 22 721 Monolignol Biosynthesis Gene Families AT3G53260 76.761 0.0 1142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0130 K10775 - gmx:100818777 1169.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0096 20 620825 623808 Lal24g0130 24 943984 948590 ECH
Lal1g1811 1 20447460 20450249 Lal24g0130 24 943984 948590 ECH
Lal13g1491 13 14436618 14441908 Lal24g0130 24 943984 948590 ECH
Lal12g0949 12 8084350 8090877 Lal24g0130 24 943984 948590 ECH
Lal24g0130 24 943984 948590 Lal24g0130 24 943984 948590 ECH