Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0129 ATGGGTTTGCTCAGCAGTTTATTGGGGATTATTGGTTTTGTTATTGGAATCCCTCTTGGCCTATTGGTTGGCTTCTTTGTATTTGTTTATCCTGAAGATACCAAACAAGTTAAGGACCCTGTTGTTAGGCCAATTAGTGACTTAGGCCCAAAAGCTGTGGAAGAACTTCTACCTGAGATTCCTCCGTGGGTGAAGACACCTGATTATGAACGAGTTGATTGGTTAAACAAGTTTTTGCTGGATATGTGGCCTTTCTTAGACAAGGCAATTTGCGGGATGATTAGACTCACTGCAAAACCAATATTTGCTGAATACATTGGGAAGTATCAGATTAAAGGAATTGAGTTTGATAAGTTAAGCCTCGGAACTCTTCCTCCTACTCTCTGTGGTATTAAAGTCTTAGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTGATCAAATGGGCTGGCAATCCAAACATAGTGTTGGATTTGCATGTGTCTTCTTTGAAGATCTCAGTTCAGATTGACGTGTTCCTCTTGGGAATTCATTTTGGTTCTTCTCAGTTGGTAGACTTACAAGTATTTGTGACATTGCGGACAACTTTAAGACCTTTAGTGCCTACAATACCTTGTTTTGCAAAGATTGTGGTATCTTTGATGGGGAAGCCTCACGTGGATTTCGGGATGAAAATATCTGGAGGAGACATCATGGCTATACCGGGTCTTTATGGATTTGTTCAGGAAACAATTAAAAAGCAAGTTGCAAGTCTCTATCTATGGCCTCAAACCTTGGAAATTCCTATCCTTGATGAATCAACGGTGGCTATAAAGAAGCCTGTGGGAATATTACATGTGAATGTAGTTCGGGCACATAAGCTTTTGAAGAAGGACTTGTTGGGAACTTCTGATCCTTATGTCAAACTAACTCTAACTGGAGACAAACTTTCAGCAAAGAAAACCAGTATCAAGATGAGGAATTTGAATCCGGAGTGGAATGAGAAATTCAAGCTTGTCGTTAAGGACCCTAATTCTCAAGTTCTCCAATTACAAGTCTATGACTGGGATAAGGTTGGCGCGCATGACAGGCTGGGAATGCAATTAGTCCCTCTTAAGGTTCTTAAACCGTATGAGAATAAAGAATTTACACTAGATTTACTTAAGGACACTAATATTAACGAAGTTCCGATAAAGAAGAATAGAGGGCAGATTGTGGTGGACTTAACTTTTGTTCCATTCAAAGAAGATAGCATGAAGTTTGGTGGAGCTTCTGGAACGTATAGCAGAAGGGAAAGTAGAAGTGATGCATTGTTAACTGATGATGAGATCGAAGAAGGATCGGGTTTACTTTCACTTGTGATACAGGAAGCTGAGGAAGTTGAGGGGGAACATCACAACAACCCATATGCAGTCCTTACCTTTAGAGGTGAAAAGAAAAAGACTAAGATGATTAGGAAAACTCGTCACCCACGTTGGAATGAAGAATTCCAATTCATGCTTGAGGAGCCACCTCTACATGAGAAAATACACATTCAGGAATCATTGGGGTATGTGGAGATTAACCTGAATGATGTGGTGCATAATGGTCGCATTAATGATAAATATCACCTTATAGATTCAAAGAATGGAGTGATACAAGTTGAGATACGATGGACAACAGCTTAA 1647 0.3971 MGLLSSLLGIIGFVIGIPLGLLVGFFVFVYPEDTKQVKDPVVRPISDLGPKAVEELLPEIPPWVKTPDYERVDWLNKFLLDMWPFLDKAICGMIRLTAKPIFAEYIGKYQIKGIEFDKLSLGTLPPTLCGIKVLETNEKELVMEQVIKWAGNPNIVLDLHVSSLKISVQIDVFLLGIHFGSSQLVDLQVFVTLRTTLRPLVPTIPCFAKIVVSLMGKPHVDFGMKISGGDIMAIPGLYGFVQETIKKQVASLYLWPQTLEIPILDESTVAIKKPVGILHVNVVRAHKLLKKDLLGTSDPYVKLTLTGDKLSAKKTSIKMRNLNPEWNEKFKLVVKDPNSQVLQLQVYDWDKVGAHDRLGMQLVPLKVLKPYENKEFTLDLLKDTNINEVPIKKNRGQIVVDLTFVPFKEDSMKFGGASGTYSRRESRSDALLTDDEIEEGSGLLSLVIQEAEEVEGEHHNNPYAVLTFRGEKKKTKMIRKTRHPRWNEEFQFMLEEPPLHEKIHIQESLGYVEINLNDVVHNGRINDKYHLIDSKNGVIQVEIRWTTA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0129 548 CDD C2 461 532 - -
Lal24g0129 548 SMART C2_3c 443 528 IPR000008 -
Lal24g0129 548 SMART C2_3c 277 377 IPR000008 -
Lal24g0129 548 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 441 546 IPR035892 -
Lal24g0129 548 ProSiteProfiles C2 domain profile. 423 546 IPR000008 -
Lal24g0129 548 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 68 264 IPR031468 GO:0008289
Lal24g0129 548 CDD C2 278 380 - -
Lal24g0129 548 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 263 IPR039010 -
Lal24g0129 548 Pfam C2 domain 443 506 IPR000008 -
Lal24g0129 548 Pfam C2 domain 276 374 IPR000008 -
Lal24g0129 548 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 547 IPR045050 GO:0008289
Lal24g0129 548 Gene3D C2 domain 271 422 IPR035892 -
Lal24g0129 548 ProSiteProfiles C2 domain profile. 255 378 IPR000008 -
Lal24g0129 548 PRINTS C2 domain signature 293 305 IPR000008 -
Lal24g0129 548 PRINTS C2 domain signature 320 333 IPR000008 -
Lal24g0129 548 PRINTS C2 domain signature 342 350 IPR000008 -
Lal24g0129 548 Gene3D C2 domain 443 547 IPR035892 -
Lal24g0129 548 PANTHER SYNAPTOTAGMIN-3 1 547 - -
Lal24g0129 548 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 273 406 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0129 Lal-Chr24 929959 934445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0129 239 359 C2H2 Transcription Factor Family AT4G21160 31.405 8.40e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0129 - - gmx:100813029 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0129 24 929959 934445 Lal24g0129 24 929959 934445 ECH
Lal12g0162 12 1158925 1165621 Lal24g0129 24 929959 934445 LSH