Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0127 ATGGTGGGACTTAACTTCATGGATGAGTTAGACTGCGGAAGCTTCTTTGACCAAATCGACGACCTCCTTGATTTCCCCGTCGAAGACGTCGTCGACGACGGTAGCACCACCATTACCACCGCCTTGCCTGCCGTCTCAGCTTCCGGAAACTGCAACTCCCTGGATAGCATCTGGCCACCGGAGTCCGAGTCATTCCCCTGCCCTGACTCCATTTTCTCCGGCAAAAGCGCTTCTGACCTCTCGGCGGAGCTTTCAGTTCCGTATGAAGATATTGTCCAATTGGAATGGCTGTCCAACTTTGTGGAGGACTCATTCTCCGGTGGGAGCCTCACCATGAACAAAGTGGAGCAACCATCCTGCACCACCACTACCACCAAGGAGGACTCATCATCAGTTCACAGCCAATTCCAGACATCAAGTCCGGTGTCTGTTCTCGAAAGCAGCAGCTCCTACTCCGGTAGTAAGACAATCCCTCGCAGCCGCCCGGAGATTTACATCCCGGTGCCTTGTGGACGTGCACGCAGCAAGCGTCCACGCCCGGCCGCTTTCAACCCTTGCCCGGCAATGCAACTCATCTCCCCTGCTTCCTCTTTTCTTGGGGAGAACATGCAGCCTAATGTTATTATTTCCACCAAGGCCTCTTCAGATTCAGAGAATTTTGCTGAGTCTCAACCTGTGACCAAGATGCGGAAACAAGGCTCTGGGGAGCATAAGAAGAAAAAGAAAATCAAACCCTCACTTCCATCAGCTCCAGCTGCTGATGATACTACTAACCAGAATGGTTCACAAGCAGTTAGGAAATGTATGCATTGTGAGATAACTAAGACACCACAGTGGAGAGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCATGCGGCGTTCGCTACAAGTCCGGTCGGCTTTTCCCTGAATACCGTCCTGCTGCTAGTCCAACATTTTGTCCATCCGTGCATTCCAATTCTCATAAAAAGGTCCTGGAAATGAGATACAGGAGTATTGAGGAAACTGGTTTTGAAACCCATTCAGCTGCTTCTCCAGAACTCATTCCAAATACTAACAGCAGCATCCTTACCCTGGAGTACATGTGA 1092 0.5073 MVGLNFMDELDCGSFFDQIDDLLDFPVEDVVDDGSTTITTALPAVSASGNCNSLDSIWPPESESFPCPDSIFSGKSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMNKVEQPSCTTTTTKEDSSSVHSQFQTSSPVSVLESSSSYSGSKTIPRSRPEIYIPVPCGRARSKRPRPAAFNPCPAMQLISPASSFLGENMQPNVIISTKASSDSENFAESQPVTKMRKQGSGEHKKKKKIKPSLPSAPAADDTTNQNGSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRYRSIEETGFETHSAASPELIPNTNSSILTLEYM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0127 363 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 266 325 - -
Lal24g0127 363 MobiDBLite consensus disorder prediction 213 261 - -
Lal24g0127 363 PANTHER GATA TRANSCRIPTION FACTOR 8 1 362 - -
Lal24g0127 363 PANTHER GATA TRANSCRIPTION FACTOR 1 362 - -
Lal24g0127 363 ProSiteProfiles GATA-type zinc finger domain profile. 262 298 IPR000679 GO:0006355|GO:0043565
Lal24g0127 363 ProSitePatterns GATA-type zinc finger domain. 268 293 IPR000679 GO:0006355|GO:0043565
Lal24g0127 363 Gene3D - 261 312 IPR013088 GO:0006355|GO:0008270
Lal24g0127 363 SMART GATA_3 262 312 IPR000679 GO:0006355|GO:0043565
Lal24g0127 363 MobiDBLite consensus disorder prediction 118 139 - -
Lal24g0127 363 MobiDBLite consensus disorder prediction 213 230 - -
Lal24g0127 363 Pfam GATA zinc finger 268 301 IPR000679 GO:0006355|GO:0043565
Lal24g0127 363 CDD ZnF_GATA 267 324 IPR000679 GO:0006355|GO:0043565
Lal24g0127 363 PIRSF Txn_fac_GATA_plant 1 356 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0127 Lal-Chr24 907623 910897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0127 19 330 C2C2-Gata Transcription Factor Family AT4G32890 35.913 6.60e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal24g0127 GATA 6.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0127 - - lang:109354556 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0127 24 907623 910897 Lal24g0127 24 907623 910897 ECH
Lal12g0159 12 1132076 1135436 Lal24g0127 24 907623 910897 LSH
Lal13g0136 13 875011 878704 Lal24g0127 24 907623 910897 LSH
Lal9g0919 9 6946862 6950989 Lal24g0127 24 907623 910897 PCT
Lal24g0127 24 907623 910897 Lal9g0919 9 6946862 6950989 PCT