Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0126 ATGTTTATGGTTAATTCCATGGAGAGGAGGAGCTCAGAAAGGTGTTTAGATTCTCAACTATGGCATGCGTGTGCAGGTGCCATGGTTCAAATGCCACCTCTGAACACAAAAGTTTTGTACTTTCCTCAAGGTCATGCAGAACATGCACATGGGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCACTCATCCCTTGCAGGGTCTCAGCTATGAAATTCATGGCAGATCCTGACACAGATGAGGTGTTTGTGAAAATGAGGTTGAACCCTCTGAGAGAAAATGAATTGAATTTTGAAGATGATTGTTTCTTAGGAAACAATGGAGTGGTTAGTCAAGATAAACCAGCTTCTTTTGCCAAGACATTGACACAATCTGATGCCAACAATGGTGGAGGTTTCTCTGTGCCTCGTTATTGTGCTGAGACAATCTTCCCAAGGTTGGACTATTCAGCAGAACCACCAGTTCAGACAATTATTGCCAAGGATGTGCATGGACAGTGCTGGAAATTCAGACATATCTATAGAGGGACACCTAGGAGGCATCTTTTGACTACTGGGTGGAGCAATTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCCATTGTGTTTCTGAGGGCACAAAATGGTGATCTTTGTGTTGGAATAAGGAGGGCTAAGAAGGGAGGAATTGGTGGAGGAACTGAGTTATCTTTTTGTTGGAACAACAACCATGCAGCCCCTCCTCTATTTGGTGGTGGTTCTGGTTTCTTGTGTGGGAATGAGAAAAACAACTCTTTGTTGATGAGAAAAGGTAGTCATGAGTTTATGGGAAGAGTGGCAGCTGAATCTGTTGTTGAAGCTATAACATGTGCTGTTAATGGAAGACCCTTTGAGGTTGTATACTATCCAAGAGCTAGTACCCCAGAGTTTTGTGTTAAGGCTTCATCTGTGAGGGCTGCAATGCAAATACAATGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACTATATCTTCTGTTCAGGTTTCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTAGTGTGGGATGAACCAGACCTACTTCAAAATGTTAGGTGTGTAAACCCTTGGTTGGTTGAACTAGTCACAAACATGCCCACCTTCCACCTCTCTCCATTCTCACCACCAAGAAAGAAACAAAGGCTTCTACAGGACCCAGAGTTTCACCTCAACAACCAACTTCCAATGCCATCATTCTCTAGAAATCTTCTCAATCATCATACTAACTCTCTACGAAACATTCAAGACCATAGTTCTTCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACTAACTCCATCTGATTTTCCCTTCAACAACAATAAGCAGCTACAACCAGAGATGCATCTTTTTGGCTTCCAAAGGCTTAACCATGCAGAAAAACCTGTTAGGCCACCTTGTGGAATCTATAAAAGCAGTACTAAGAACAATGTTGACATATCTTGCTTGTTGACAATAGGAAATCCTGGCCGGAGTTTTAAGGAATCAGATGAAGCAAAAGCACCACATATCTTGTTATTTGGAAAAGTCATTCATACTGAGCAGAAAAGTTCAAACAGTAGCTCTGCTGGTACAAATGGGAATAGTGTATCTGATAGTACTTCACAGAAGACATCAAATGCTTCTGATGGCCAAGGTTCTTCTGCTTTGCATCAAAGTAGTCCAATTGAGAACTCTTCCGATGAAGGGTCTCCCTGGTACAATGATCAGCACAAAACTGATCTTGCAACAGAAAAAGTTAACATATTATGTATGGCTTTATAA 1842 0.4229 MFMVNSMERRSSERCLDSQLWHACAGAMVQMPPLNTKVLYFPQGHAEHAHGKVDFGQTRVPPLIPCRVSAMKFMADPDTDEVFVKMRLNPLRENELNFEDDCFLGNNGVVSQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAQNGDLCVGIRRAKKGGIGGGTELSFCWNNNHAAPPLFGGGSGFLCGNEKNNSLLMRKGSHEFMGRVAAESVVEAITCAVNGRPFEVVYYPRASTPEFCVKASSVRAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVSDPIRWPDSPWRLLQVVWDEPDLLQNVRCVNPWLVELVTNMPTFHLSPFSPPRKKQRLLQDPEFHLNNQLPMPSFSRNLLNHHTNSLRNIQDHSSSSIQGARHAQFGLTPSDFPFNNNKQLQPEMHLFGFQRLNHAEKPVRPPCGIYKSSTKNNVDISCLLTIGNPGRSFKESDEAKAPHILLFGKVIHTEQKSSNSSSAGTNGNSVSDSTSQKTSNASDGQGSSALHQSSPIENSSDEGSPWYNDQHKTDLATEKVNILCMAL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0126 613 CDD B3_DNA 117 218 IPR003340 GO:0003677
Lal24g0126 613 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 584 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal24g0126 613 PANTHER AUXIN RESPONSE FACTOR 16 9 584 - -
Lal24g0126 613 Gene3D - 318 392 - -
Lal24g0126 613 MobiDBLite consensus disorder prediction 542 595 - -
Lal24g0126 613 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Lal24g0126 613 Pfam Auxin response factor 282 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal24g0126 613 SMART B3_2 118 220 IPR003340 GO:0003677
Lal24g0126 613 MobiDBLite consensus disorder prediction 542 592 - -
Lal24g0126 613 Gene3D - 116 220 IPR015300 -
Lal24g0126 613 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Lal24g0126 613 SUPERFAMILY DNA-binding pseudobarrel domain 107 218 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0126 Lal-Chr24 899001 902404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0126 3 597 B3 DNA Binding Superfamily AT4G30080 55.719 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal24g0126 B3 1.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0126 - - gmx:100803053 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1500 13 14608534 14611815 Lal24g0126 24 899001 902404 ECH
Lal24g0889 24 7272787 7276678 Lal24g0126 24 899001 902404 ECH
Lal24g0126 24 899001 902404 Lal24g0126 24 899001 902404 ECH
Lal12g0158 12 1119401 1122383 Lal24g0126 24 899001 902404 LSH