Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0100 ATGCAGAAGCCTAATTTTGCATCAAAATCATCTTCAAAATGCACTGCTGTGTTGCCATATCAAACTCCAAGGCTAAGAGAACATTATCTTCTTGGAAAGAAACTTGGGCAAGGCCAATTTGGTACCACATACCTATGCACCCACAAGGCCACAGGGAAACTCTATGCATGCAAATCAATCCCAAAAAGGAAGCTTTTGTGCCAAGAGGATTATGATGATGTGTGGAGAGAGATTCAGATCATGCACCATTTATCTGAGCACCCTAATGTGGTTCAGATACAAGGGACCTATGAGGATTCTGTGTTTGTGCACCTTGTGATGGAGCTGTGTGCAGGGGGTGAACTTTTTGATAGGATTATTCAGAAGGGGCATTATAGTGAGAAAGAGGCTGTGAAGTTGATCAAGACCATTGTTGCTGTGGTTGAGGCATGTCACTCTCTTGGTGTCATTCATAGAGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCCAAGATGAAGGCCACTGATTTTGGCCTCTCTGTGTTCTACAAGCCAGGACAATACTTTCATGATGTAGTTGGAAGTCCCTACTATGTTGCCCCTGAGGTGTTGTGCAAGCAATATGGACCACACGTGGATGTGTGGAGTGTTGGTGTTATCCTATACATATTACTGAGTGGGGTTCCTCCTTACTGGGCTGGTAATGATCTTCGCGTGTACCAAACCGAAGCAGGAATTTTCAAACAGATTTTACATGCAGAGCTAGATTTTAAATCTGAACCATGGCCAAATATCTCAGACAGTGCTAAAGATTTGGTAAAAAAGATGCTGGATAGGGACCCTAAGAGGAGAATTTCTGCTCATGAAGTCTTATGCCACCCTTGGATTGTTGATGATACGGTTGCCCCGGACAAACCTCTGGATTCTGCTGTTTTGACTCGCCTGAAGCATTTCTCGGCAATGAATAAACTTAAGAAGATGGCACTGCGTGTGATAGCAGAAAGACTCTCAGAGGAAGAAATAGGTGGCTTAAAAGAGTTATTCAAAATGATTGACACTGACAACAGTGGGACTATAACATTTGAAGAGCTGAAGGATGGTTTGAAAAGAGTGGGCTCTAATCTCATGGAATCTGAAATTAAATCCCTGATGGAAGCGGCTGACATAGACAACAGTGGAACAATAGACTATGGTGAATTTCTTGCTGCCACACTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTAGTTGCAGCTTTTGCCTATTTTGATAAAGATGGAAGTGGTTACATCACCATTGACGAGCTTCAACAGGCTTCTAAAGACTTCGGCCTAGGTGACGTACGTCTGGATGATATGATTAAAGAGATCGACACAGACAATGATGGGAGAATTGATTATGGAGAGTTTGCAGCAATGATGAAAAAGGGTGATCCAGACATGGGTAGGAGCAGAACCATGAAAGGCAATTTAAACTTCAACATAGCTGATGCATTTGCAGTGAAAGAAGATTCTTCTTGA 1515 0.4251 MQKPNFASKSSSKCTAVLPYQTPRLREHYLLGKKLGQGQFGTTYLCTHKATGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEKEAVKLIKTIVAVVEACHSLGVIHRDLKPENFLFDTPGEDAKMKATDFGLSVFYKPGQYFHDVVGSPYYVAPEVLCKQYGPHVDVWSVGVILYILLSGVPPYWAGNDLRVYQTEAGIFKQILHAELDFKSEPWPNISDSAKDLVKKMLDRDPKRRISAHEVLCHPWIVDDTVAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKDGLKRVGSNLMESEIKSLMEAADIDNSGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQASKDFGLGDVRLDDMIKEIDTDNDGRIDYGEFAAMMKKGDPDMGRSRTMKGNLNFNIADAFAVKEDSS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0100 504 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Lal24g0100 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 486 - -
Lal24g0100 504 SMART efh_1 413 441 IPR002048 GO:0005509
Lal24g0100 504 SMART efh_1 447 475 IPR002048 GO:0005509
Lal24g0100 504 SMART efh_1 341 369 IPR002048 GO:0005509
Lal24g0100 504 SMART efh_1 377 405 IPR002048 GO:0005509
Lal24g0100 504 CDD STKc_CAMK 28 293 - -
Lal24g0100 504 SUPERFAMILY Protein kinase-like (PK-like) 25 304 IPR011009 -
Lal24g0100 504 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Lal24g0100 504 CDD EFh 342 401 IPR002048 GO:0005509
Lal24g0100 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Lal24g0100 504 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Lal24g0100 504 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Lal24g0100 504 SUPERFAMILY EF-hand 333 473 IPR011992 -
Lal24g0100 504 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Lal24g0100 504 PANTHER BNAA09G05220D PROTEIN 16 486 - -
Lal24g0100 504 Pfam Protein kinase domain 31 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0100 504 ProSiteProfiles Protein kinase domain profile. 29 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0100 504 ProSiteProfiles EF-hand calcium-binding domain profile. 447 478 IPR002048 GO:0005509
Lal24g0100 504 Pfam EF-hand domain pair 412 473 IPR002048 GO:0005509
Lal24g0100 504 Pfam EF-hand domain pair 342 402 IPR002048 GO:0005509
Lal24g0100 504 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Lal24g0100 504 Gene3D - 305 476 - -
Lal24g0100 504 Gene3D Transferase(Phosphotransferase) domain 1 115 304 - -
Lal24g0100 504 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Lal24g0100 504 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Lal24g0100 504 SMART serkin_6 29 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0100 504 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0100 Lal-Chr24 678822 682716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0100 1 504 EF-hand Containing Proteins AT4G09570 79.167 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal24g0100 Pkinase 6.6e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0100 K13412 - gmx:547887 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0100 24 678822 682716 Lal24g0100 24 678822 682716 ECH
Lal13g0103 13 648274 651477 Lal24g0100 24 678822 682716 LSH