Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0093 ATGGGTAGCTTCAGTCTTCTCTTGTTTTTCTTCTATTTTGTGGGTTTGTGTGCTATGGCGGCTGCCAAGGTGGTTTTGATTGGGAGCAATGTCACTCTCTCCTTCGATGACATTGAAGCTAATTTCGTTCCCAAGATCAAAGGGTCTGGAGAATGTGGGGTCTTATATTTAGCTGAACCACTTGATGCATGTACAGAACTGACAAATAAAGCTGGATATCTTTCAAATGTAAGTTCACCATTTGTTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAAAAGGTCAAAAGTGCTCAAAGTGCTGGATACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGTGTCTTAATTGCAATGGCTGGAAATTCTGCTGGTATAAGAATACACTCAGTATTTGTATCGAAAACTTCAGGTGAAATACTAAAGAAATACGCAGGATCGACCAATGTGGAACTATGGCTCATTGCAAGTTTTGAAAACTCAACTTGGTCTATCATGGCGATTTCATTTATCTCCCTACTAGCTATGTCTGCAGTGCTGGGCACTTGTTTCTTTGTCAGGAGGCATCGCATAAGAAGAGAAAGGCCACGAGCTTCTCATGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTTAAAGCAATGCCAAGTTTGATATTTAATGCTGTTTTGGAAGATAACTACTGCACATCAAGAACATGTTCTATATGCCTTGAAGATTATTGTGTTGGGGAAAAGCTCAGGATTCTGCCATGTTGTCACAAGTTTCATGCCGTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGACGCAAGAACTGGTTTAACTGATCCACCACCTTCAGAATCCACACCTTTGCTTTCATCAAGCCTTGCATCTGTGGCATCCTCTGTCTTATCTTCTGGGAGGTCATCACTAGCATCATCCTCAGCTATACAAATTGCTCGGGCACCCTCACAGTCCCCATCTGTTTCTCGTAACCACTCTTTAGCTAGTATGCCCTATGTTCAGCCATCTTTTAGGTCCTACCATCAGTCCCCCTCACTAAGCATCGGCCGAAGCTCTGTGGATCTTAGGAATGGATCCAGAAGATCTCTAGCATCTCACTTGAATTCACCACGTTCAACGGGTTACCCATCTTTGTCATCTCTCAACTCAAGGTACATGTCGCCATACATTCCAAGTCTAAGCAATGCTTCAGTAAGTTACATGGGTTCGTCTAGTCACCAACAGCATCCTCTCCGTTATAGTGAGTCAGCCGCAAGCTTCTCACCGTTTGCATCTGCAAACTCCCTTCCAGAAGATTAA 1335 0.433 MGSFSLLLFFFYFVGLCAMAAAKVVLIGSNVTLSFDDIEANFVPKIKGSGECGVLYLAEPLDACTELTNKAGYLSNVSSPFVLVVRGGCSFEEKVKSAQSAGYKAAIVYDNEDGGVLIAMAGNSAGIRIHSVFVSKTSGEILKKYAGSTNVELWLIASFENSTWSIMAISFISLLAMSAVLGTCFFVRRHRIRRERPRASHVREFHGMSSRLVKAMPSLIFNAVLEDNYCTSRTCSICLEDYCVGEKLRILPCCHKFHAVCVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSLASVASSVLSSGRSSLASSSAIQIARAPSQSPSVSRNHSLASMPYVQPSFRSYHQSPSLSIGRSSVDLRNGSRRSLASHLNSPRSTGYPSLSSLNSRYMSPYIPSLSNASVSYMGSSSHQQHPLRYSESAASFSPFASANSLPED 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0093 444 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 4 380 - -
Lal24g0093 444 SUPERFAMILY RING/U-box 221 287 - -
Lal24g0093 444 Pfam PA domain 62 142 IPR003137 -
Lal24g0093 444 SMART ring_2 235 276 IPR001841 -
Lal24g0093 444 MobiDBLite consensus disorder prediction 351 389 - -
Lal24g0093 444 CDD PA_C_RZF_like 16 162 IPR044744 -
Lal24g0093 444 Pfam Ring finger domain 234 277 IPR001841 -
Lal24g0093 444 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 380 - -
Lal24g0093 444 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Lal24g0093 444 Gene3D - 23 157 - -
Lal24g0093 444 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Lal24g0093 444 SUPERFAMILY PA domain 76 152 IPR046450 -
Lal24g0093 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 282 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0093 Lal-Chr24 617411 622912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0093 21 443 C3H Transcription Factor Family AT1G22670 46.189 3.68e-109 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0093 K15692 - gmx:100791248 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0122 12 840381 845018 Lal24g0093 24 617411 622912 LSH
Lal13g0098 13 624009 627560 Lal24g0093 24 617411 622912 LSH