Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0088 ATGCCTTCTAGCTGTTTATTCTCTGGTGCTCAGTATGTAGGAGCTGATCACTTATTCTTATGTTTTGAAACAGGTGATGCTTTGCATAGCCTGAGGACAAATTTACAGGACCCTAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCGTGTACATGGTTTCATGTAACATGTAACAATGATAATAATGTCATAAGAGTTGATCTGGGAAATGCTGCTTTATCTGGTCAGCTTGTTCCACAGCTTGGTCAGCTCAAGAATTTACAGTATCTGGAACTTTACAGCAATAACATTACTGGCCCTATTCCAAGCGACCTGGGGAATCTTACTAACTTGGTTAGCTTGGATCTGTACCTAAACACCTTCACCGGCCCTATCCCAGATACTTTGAGCAAGTTGTCAAAATTGCGTTTCCTCCGACTTAACAACAACAGCTTGTCAGGTCCTATACCAATATCCCTGACTAATATTTCATCTCTCCAAGTTTTGGACTTGTCCAATAACCGTCTCTCTGGTGTGGTTCCTGATAATGGTTCCTTCTCATTATTCACCCCTATCAGTTTTAGCAACAATTTGAATCTATGTGGACCAGTCACTGGCCGCCCTTGTCCAGGCTCTCCTCCATTTTCTCCTCCTCCCCCCTTTGTCATTCCACCAGCAGTTTATGCCCCAGCAGGTAATAGTGCCACTGGGGCAATAGCTGGAGGAGTTGCTGCAGGCGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCATGTTGGCGTCGGAGGAAACCACAAGAATGTTTCTTTGACGTTCCTGCTGAAGAGGATCCTGAGGTCCATCTTGGGCAACTTAAGAGGTTCTCCCTACGAGAACTGCATGTTGCAACAGATACTTTCACCAATAAGAACATTCTTGGGAGAGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCGTTAGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCATAGAAATCTCCTCCGTTTACGTGGGTTTTGTATGACACCAACAGAAAGGCTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCTCCACATCAAGAGCCCCTAGATTGGCCAACAAGAAAAAGAATAGCGTTGGGATCAGCAAGAGGTCTTTCATATTTGCATGATCATTGTGACCCGAAGATCATTCATCGTGATGTGAAAGCTGCAAACATATTGTTGGATGAGGAGTTCGAGGCTGTTGTTGGAGATTTTGGATTGGCAAAACTTATGGATTATAAGGACACACATGTGACAACTGCTGTACGCGGTACAATTGGGCACATAGCTCCAGAGTACCTCTCTACTGGTAAATCTTCAGAGAAAACTGACGTTTTTGGTTATGGTATCATGCTTCTGGAGCTGATCACCGGACAAAGAGCTTTTGACCTTGCTCGGCTTGCTAATGATGACGATGTTATGTTGCTAGATTGGGTAAAAGGACTACTGAAAGAGAAAAAACTAGAAATGTTGGTAGATCCTGATCTACATAACAATTACATAGAAGCAGAGGTAGAACAGTTAATTCAGGTTGCACTACTCTGCACACAAGGTTCCCCGATGGACCGACCCAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGGTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTAGAAGTGCTTCGACAGGAAGAGGAGCTGGCCCCTCATCCTAATTCTGATTGGATTCTTGACTCAACTGAAAATTTACATGCTATTGAGTTATCTGGTCCTAGGGCTAGTGGCTTTGTCAAGTTGCAATTTGTATTGTCAGCTGCATTTTGA 1908 0.4408 MPSSCLFSGAQYVGADHLFLCFETGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNNVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNTFTGPIPDTLSKLSKLRFLRLNNNSLSGPIPISLTNISSLQVLDLSNNRLSGVVPDNGSFSLFTPISFSNNLNLCGPVTGRPCPGSPPFSPPPPFVIPPAVYAPAGNSATGAIAGGVAAGAALLFAAPAIAFACWRRRKPQECFFDVPAEEDPEVHLGQLKRFSLRELHVATDTFTNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEEELAPHPNSDWILDSTENLHAIELSGPRASGFVKLQFVLSAAF 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0088 635 Pfam Protein kinase domain 298 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0088 635 SUPERFAMILY L domain-like 26 196 - -
Lal24g0088 635 SMART serkin_6 297 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0088 635 CDD STK_BAK1_like 303 574 - -
Lal24g0088 635 ProSiteProfiles Protein kinase domain profile. 297 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0088 635 Gene3D Transferase(Phosphotransferase) domain 1 374 591 - -
Lal24g0088 635 ProSiteProfiles Leucine-rich repeat profile. 161 182 IPR001611 GO:0005515
Lal24g0088 635 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 24 620 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lal24g0088 635 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Lal24g0088 635 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Lal24g0088 635 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 24 620 - -
Lal24g0088 635 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Lal24g0088 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Lal24g0088 635 SUPERFAMILY Protein kinase-like (PK-like) 276 572 IPR011009 -
Lal24g0088 635 Gene3D Ribonuclease Inhibitor 23 207 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0088 Lal-Chr24 568615 574053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0088 25 620 Receptor kinase-like Gene Family AT1G34210 91.275 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lal24g0088 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0088 K13418 - gmx:100789884 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0088 24 568615 574053 Lal24g0088 24 568615 574053 ECH
Lal12g0115 12 768899 774412 Lal24g0088 24 568615 574053 LSH
Lal13g0093 13 602154 607848 Lal24g0088 24 568615 574053 LSH