Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0082 ATGTTCGCTCTTACCTCAATCAAGGGAATTGGTAGAAGACTCGCTAACATTGCTTGCAAGAAAGCCGATGTTGACATGAATCAGAGAGCTGGTGAGTTGAGTGCTGCTGAACTTGATAACATAATTACCGTGATTGCGAACCCTCGCCAATTCAAGATACCTGATTGGTTTTTGAATAGGAAGAAGGATTATAAGGATGGAAAGTATTCTCAGGTTGTTTCTAATGCACTTGACATGAAGTTGAGAGATGATTTGGAGAGACTCAAGAAAATCAGAAACCATCACGGTTTGAGGCATTACTGGGGCCTTCGTGTTCGTGGCCAGCATACCAAGACTACTGGTTGCAGGGGTAAAACTGTTGGTGTCTCCAAGAAGCGTTAA 381 0.4304 MFALTSIKGIGRRLANIACKKADVDMNQRAGELSAAELDNIITVIANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHHGLRHYWGLRVRGQHTKTTGCRGKTVGVSKKR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0082 126 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 1 126 - -
Lal24g0082 126 Gene3D - 1 54 - -
Lal24g0082 126 Pfam Ribosomal protein S13/S18 2 114 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal24g0082 126 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 1 126 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal24g0082 126 ProSiteProfiles Ribosomal protein S13 family profile. 1 119 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal24g0082 126 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 126 - -
Lal24g0082 126 SUPERFAMILY S13-like H2TH domain 2 126 IPR010979 GO:0003676
Lal24g0082 126 Gene3D 30s ribosomal protein s13, domain 2 66 116 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0082 Lal-Chr24 529890 537564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0082 1 126 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 92.063 4.35e-86 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0082 K02964 - jre:109010259 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0082 24 529890 537564 Lal24g0082 24 529890 537564 ECH
Lal12g0098 12 657554 659269 Lal24g0082 24 529890 537564 LSH
Lal13g0081 13 529110 531211 Lal24g0082 24 529890 537564 LSH