Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0080 ATGTGCTTTATAACGGTGGCGCACCAAAGGGGTTCAGGGAGGTCGACGGAGGAGCACGGCAGCGATGAGGAAGTGGAAGAGAGTTTTGAAGCAGCACTAAAGGAGCAAGGGGATTTGAGTGCCATTGTTTCAGCACTGACCCGTGTGGTGTCAACTCCCTCTTCCTCTGCTCAAAGTAGCATAGTCCAAGGAAGTGGTTTTCCTATGATGTCACCCTCTTCTTCTTCTTCTCTTTTGGGGCAGAAAAGAGAGCGTGAACACGAGAGTAGTGTAGGTGCTTCTTCTCACTTCATACATGATGTGACTACCCTCTCTACAACATCCCAAGCAGACTCATCTTCAAGTGAAGAGAGAAGAAGATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATTCGTGATCCACACAAAGCAGCAAGAGTATGGCTTGGCACTTTTGAAACTGCTGAAGCAGCAGCAAGAGCTTATGATGAAGCTGCTTTAAGATTCAGAGGAAACAGAGCAAAACTCAACTTCCCTGAGAACGTTAGAGCAATGCCACCGCCACCACCACCACCCTCTTCATCATTGATGCAGATGGCGGCGCCACCACTTCAGGGCTCCTCTCACTTGATGAGAGACTATTGGCAATATTCACAATTGTTAAAGGGTTCTGGAGACTACCATGGATTTGAGCAGTGGTTCTATGATTCTCAGATGGCTACGCTTCAATCTTCATCTTCATCTTCATCATCACTATCTTTGTCGTCTACTTCATTTGCACCATCTACTCAAATGTCCTTCCTTCCCACCATGTTTTCAAGTCAGCAAATGGGGTTGTTCCTGCCACCGGGAGATCACTCTCACGGTGGAAGTGACGGAGGAGGTGGAGGCTCAGATTCTATACCTTCAACAACAACGACAACGTGGTCAGATATTAGTGGTCATCCTCCTCCACGTGGTTGA 957 0.4796 MCFITVAHQRGSGRSTEEHGSDEEVEESFEAALKEQGDLSAIVSALTRVVSTPSSSAQSSIVQGSGFPMMSPSSSSSLLGQKREREHESSVGASSHFIHDVTTLSTTSQADSSSSEERRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVRAMPPPPPPPSSSLMQMAAPPLQGSSHLMRDYWQYSQLLKGSGDYHGFEQWFYDSQMATLQSSSSSSSSLSLSSTSFAPSTQMSFLPTMFSSQQMGLFLPPGDHSHGGSDGGGGGSDSIPSTTTTTWSDISGHPPPRG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0080 318 MobiDBLite consensus disorder prediction 7 30 - -
Lal24g0080 318 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Lal24g0080 318 MobiDBLite consensus disorder prediction 53 122 - -
Lal24g0080 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 53 271 - -
Lal24g0080 318 MobiDBLite consensus disorder prediction 276 318 - -
Lal24g0080 318 PANTHER DNA-BINDING DOMAIN 53 271 IPR044808 GO:0003700|GO:0009873
Lal24g0080 318 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Lal24g0080 318 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Lal24g0080 318 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Lal24g0080 318 MobiDBLite consensus disorder prediction 295 311 - -
Lal24g0080 318 MobiDBLite consensus disorder prediction 180 195 - -
Lal24g0080 318 MobiDBLite consensus disorder prediction 12 30 - -
Lal24g0080 318 MobiDBLite consensus disorder prediction 95 112 - -
Lal24g0080 318 MobiDBLite consensus disorder prediction 53 79 - -
Lal24g0080 318 CDD AP2 128 179 IPR001471 GO:0003700|GO:0006355
Lal24g0080 318 MobiDBLite consensus disorder prediction 177 198 - -
Lal24g0080 318 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Lal24g0080 318 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Lal24g0080 318 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0080 Lal-Chr24 518402 519358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0080 65 184 AP2-EREBP Transcription Factor Family AT2G33710 51.908 5.49e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal24g0080 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0080 - - lang:109354598 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0987 2 6750842 6753276 Lal24g0080 24 518402 519358 PCT
Lal9g0875 9 6563347 6566327 Lal24g0080 24 518402 519358 PCT
Lal24g0080 24 518402 519358 Lal2g0987 2 6750842 6753276 PCT
Lal24g0080 24 518402 519358 Lal9g0875 9 6563347 6566327 PCT